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组氨酸 225 在腺苷钴胺素依赖的鸟氨酸 4,5-氨基甲酰转移酶中的作用。

Role of histidine 225 in adenosylcobalamin-dependent ornithine 4,5-aminomutase.

机构信息

Department of Chemistry, University of British Columbia Okanagan, 3333 University Way, Kelowna BC, Canada V1V 1V7.

Manchester Interdisciplinary Biocentre, Faculty of Life Sciences, University of Manchester, 131 Princess Street, Manchester, M1 7DN, UK.

出版信息

Bioorg Chem. 2012 Feb;40(1):39-47. doi: 10.1016/j.bioorg.2011.08.003. Epub 2011 Aug 16.

Abstract

Pyridoxal 5'-phosphate (PLP), in the active site of ornithine 4,5-aminomutase (OAM), forms a Schiff base with N(δ) of the d-ornithine side chain and facilitates interconversion of the amino acid to (2R, 4S) 2,4-diaminopentanoic acid via a radical-based mechanism. The crystal structure of OAM reveals that His225 is within hydrogen bond distance to the PLP phenolic oxygen, and may influence the pK(a) of the Schiff base during radical rearrangement. To evaluate the role of His225 in radical stabilization and catalysis, the residue was substituted with a glutamine and alanine. The H225Q and H225A variants have a 3- and 10-fold reduction in catalytic turnover, respectively, and a decrease in catalytic efficiency (7-fold for both mutants). Diminished catalytic performance is not linked to an increase in radical-based side reactions leading to enzyme inactivation. pH-dependence studies show that k(cat) increases with the ionization of a functional group, but it is not attributed to His225. Binding of 2,4-diaminobutyric acid to native OAM leads to formation of an overstabilized 2,4-diaminobutyryl-PLP derived radical. In the H225A and the H225Q mutants, the radical forms and then decays, as evidenced by accumulation of cob(III)alamin. From these data, we propose that His225 enhances radical stability by acting as a hydrogen bond acceptor to the phenolic oxygen, which favors the deprotonated state of the imino nitrogen and leads to greater resonance stabilization of the 2,4-diaminobutyryl-PLP radical intermediate. The potential role of His225 in lowering the activation energy barrier to mediate PLP-dependent radical rearrangement is discussed.

摘要

磷酸吡哆醛(PLP)在鸟氨酸 4,5-氨基移换酶(OAM)的活性部位与 d-鸟氨酸侧链的 N(δ)形成席夫碱,并通过基于自由基的机制促进氨基酸转化为(2R,4S)2,4-二氨基戊酸。OAM 的晶体结构表明 His225 与 PLP 酚氧处于氢键距离内,并且可能在自由基重排过程中影响席夫碱的 pK(a)。为了评估 His225 在自由基稳定和催化中的作用,该残基被谷氨酸和丙氨酸取代。H225Q 和 H225A 变体的催化周转率分别降低了 3 倍和 10 倍,催化效率降低(两种突变体均降低 7 倍)。催化性能的降低与导致酶失活的基于自由基的副反应增加无关。pH 依赖性研究表明,k(cat)随功能基团的电离而增加,但这与 His225 无关。2,4-二氨基丁酸与天然 OAM 的结合导致形成过稳定的 2,4-二氨基丁酰-PLP 衍生自由基。在 H225A 和 H225Q 突变体中,自由基形成然后衰减,这是由 cob(III)alamin 的积累证明的。根据这些数据,我们提出 His225 通过充当酚氧的氢键受体来增强自由基稳定性,这有利于亚氨基氮的去质子化状态,并导致 2,4-二氨基丁酰-PLP 自由基中间体的共振稳定性更大。讨论了 His225 在降低激活能垒以介导 PLP 依赖性自由基重排中的潜在作用。

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