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珍珠贝(Pinctada maxima)套膜器官中与生物矿化相关基因表达的空间分析。

Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oyster Pinctada maxima.

机构信息

Faculty of Science and Technology, Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, QLD 4000, Australia.

出版信息

BMC Genomics. 2011 Sep 21;12:455. doi: 10.1186/1471-2164-12-455.

Abstract

BACKGROUND

Biomineralization is a process encompassing all mineral containing tissues produced within an organism. One of the most dynamic examples of this process is the formation of the mollusk shell, comprising a variety of crystal phases and microstructures. The organic component incorporated within the shell is said to dictate this architecture. However general understanding of how this process is achieved remains ambiguous. The mantle is a conserved organ involved in shell formation throughout molluscs. Specifically the mantle is thought to be responsible for secreting the protein component of the shell. This study employs molecular approaches to determine the spatial expression of genes within the mantle tissue to further the elucidation of the shell biomineralization.

RESULTS

A microarray platform was custom generated (PmaxArray 1.0) from the pearl oyster Pinctada maxima. PmaxArray 1.0 consists of 4992 expressed sequence tags (ESTs) originating from mantle tissue. This microarray was used to analyze the spatial expression of ESTs throughout the mantle organ. The mantle was dissected into five discrete regions and analyzed for differential gene expression with PmaxArray 1.0. Over 2000 ESTs were determined to be differentially expressed among the tissue sections, identifying five major expression regions. In situ hybridization validated and further localized the expression for a subset of these ESTs. Comparative sequence similarity analysis of these ESTs revealed a number of the transcripts were novel while others showed significant sequence similarities to previously characterized shell related genes.

CONCLUSIONS

This investigation has mapped the spatial distribution for over 2000 ESTs present on PmaxArray 1.0 with reference to specific locations of the mantle. Expression profile clusters have indicated at least five unique functioning zones in the mantle. Three of these zones are likely involved in shell related activities including formation of nacre, periostracum and calcitic prismatic microstructure. A number of novel and known transcripts have been identified from these clusters. The development of PmaxArray 1.0, and the spatial map of its ESTs expression in the mantle has begun characterizing the molecular mechanisms linking the organics and inorganics of the molluscan shell.

摘要

背景

生物矿化是一个涵盖生物体中所有含矿物质组织形成的过程。这个过程最具活力的例子之一是软体动物贝壳的形成,它包含各种晶体相和微观结构。贝壳内的有机成分被认为决定了这种结构。然而,人们对这一过程是如何实现的总体理解仍不清楚。

套膜是一种保守的器官,参与整个软体动物贝壳的形成。具体来说,套膜被认为负责分泌贝壳的蛋白质成分。本研究采用分子方法来确定套膜组织中基因的空间表达,以进一步阐明贝壳的生物矿化过程。

结果

从珍珠贝 Pinctada maxima 中定制生成了一个微阵列平台(PmaxArray 1.0)。PmaxArray 1.0 由 4992 个源自套膜组织的表达序列标签(EST)组成。该微阵列用于分析套膜器官中 EST 的空间表达。将套膜分为五个不同的区域,并使用 PmaxArray 1.0 分析它们的基因表达差异。确定了 2000 多个 EST 在组织切片中差异表达,确定了五个主要的表达区域。原位杂交验证并进一步定位了这些 EST 的表达。对这些 EST 的序列相似性比较分析表明,其中一些转录本是新的,而另一些则与以前表征的贝壳相关基因具有显著的序列相似性。

结论

本研究利用 PmaxArray 1.0 参考套膜特定位置,绘制了超过 2000 个 EST 的空间分布图谱。表达谱聚类表明套膜中至少有五个独特的功能区。其中三个区域可能与贝壳相关活动有关,包括珍珠层、角质层和方解石棱柱微观结构的形成。从这些聚类中已经鉴定出一些新的和已知的转录本。PmaxArray 1.0 的开发以及其在套膜中的 EST 表达的空间图谱开始表征将有机和无机物质连接在一起的软体动物贝壳的分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9d44/3191542/0a018734f846/1471-2164-12-455-1.jpg

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