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DNA 修复的最优性。

Optimality in DNA repair.

机构信息

Institute of Complex Systems and Mathematical Biology, King's College, University of Aberdeen, Aberdeen, UK.

出版信息

J Theor Biol. 2012 Jan 7;292(100):39-43. doi: 10.1016/j.jtbi.2011.08.024. Epub 2011 Sep 19.

DOI:10.1016/j.jtbi.2011.08.024
PMID:21945337
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4071444/
Abstract

DNA within cells is subject to damage from various sources. Organisms have evolved a number of mechanisms to repair DNA damage. The activity of repair enzymes carries its own risk, however, because the repair of two nearby lesions may lead to the breakup of DNA and result in cell death. We propose a mathematical theory of the damage and repair process in the important scenario where lesions are caused in bursts. We use this model to show that there is an optimum level of repair enzymes within cells which optimises the cell's response to damage. This optimal level is explained as the best trade-off between fast repair and a low probability of causing double-stranded breaks. We derive our results analytically and test them using stochastic simulations, and compare our predictions with current biological knowledge.

摘要

细胞内的 DNA 会受到各种来源的损伤。生物已经进化出许多机制来修复 DNA 损伤。然而,修复酶的活性也有其自身的风险,因为修复两个相邻的损伤可能导致 DNA 断裂,并导致细胞死亡。我们提出了一种在重要的爆发性损伤情况下的损伤和修复过程的数学理论。我们使用这个模型表明,细胞内存在最佳的修复酶水平,使细胞对损伤的反应达到最佳。这种最佳水平可以解释为快速修复和低双链断裂概率之间的最佳权衡。我们通过分析推导了我们的结果,并使用随机模拟进行了测试,还将我们的预测与当前的生物学知识进行了比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/25556b61d3f2/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/a9d777edeca5/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/b236dac255d4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/25556b61d3f2/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/a9d777edeca5/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/b236dac255d4/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/05d5/4071444/25556b61d3f2/gr3.jpg

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本文引用的文献

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Stochastic analysis of the SOS response in Escherichia coli.大肠杆菌中SOS反应的随机分析。
PLoS One. 2009;4(5):e5363. doi: 10.1371/journal.pone.0005363. Epub 2009 May 8.
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A mathematical model for the detection mechanism of DNA double-strand breaks depending on autophosphorylation of ATM.一种依赖于ATM自身磷酸化的DNA双链断裂检测机制的数学模型。
PLoS One. 2009;4(4):e5131. doi: 10.1371/journal.pone.0005131. Epub 2009 Apr 13.
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A mathematical model for human nucleotide excision repair: damage recognition by random order assembly and kinetic proofreading.人类核苷酸切除修复的数学模型:通过随机顺序组装和动力学校对进行损伤识别。
J Theor Biol. 2007 Nov 21;249(2):361-75. doi: 10.1016/j.jtbi.2007.07.025. Epub 2007 Aug 8.
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Spontaneous DNA breakage in single living Escherichia coli cells.单个活大肠杆菌细胞中的自发DNA断裂
Nat Genet. 2007 Jun;39(6):797-802. doi: 10.1038/ng2051. Epub 2007 May 27.
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Simulating the temporal modulation of inducible DNA damage response in Escherichia coli.模拟大肠杆菌中诱导性DNA损伤反应的时间调控
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