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[淡水海绵硅酸蛋白:基因序列与外显子-内含子结构的比较]

[Freshwater sponge silicateins: comparison of sequences and exon-intron structure of genes].

作者信息

Kaliuzhnaia O V, Kras'ko A G, Grebeniuk V A, Itskovich V B, Semiturkina N A, Solovarov I S, Mueller W E G, Belikov S I

出版信息

Mol Biol (Mosk). 2011 Jul-Aug;45(4):617-26.

Abstract

Siliceous sponge spicules contain silicateins--proteins taking part in biogenic silica precipitation and determination of the spicule morphological features. The exon-intron structure of four silicatein-alpha isoforms: -alpha1,-alpha2, -alpha3 and -alpha4 from endemic baikalian sponge Lubomirskia baicalensis was studied. For eight sponge species, including both cosmopolitan (Spongilla lacustris, Ephydatia muelleri, E. fluviatilis) and Baikal endemic (L. baicalensis, L. incrustans, Baikalospongia intermedia, B. fungiformis, Sw. papyracea) species, seventeen gene fragment sequences of different silicatein isoforms were determined. It was shown that cosmopolitan and endemic Baikalian sponges differ from each other by gene structure (have different length ofintrons). Among Baikalian sponges silicatein-alpha1 has the most variable intron length, and silicatein-alpha4 is the most conservative. Phylogenetic analysis of amino-acid silicatein sequences allow identify different silicatein isoforms, which authentically differ form four clusters on phylogenetic tree. Phylogenetic analysis of exon-intron sequences gives the possibility to separate different sponge species in the clusters.

摘要

硅质海绵骨针含有硅酸蛋白——参与生物源二氧化硅沉淀并决定骨针形态特征的蛋白质。对来自贝加尔湖特有海绵巴氏湖针海绵的四种硅酸蛋白α亚型(α1、α2、α3和α4)的外显子-内含子结构进行了研究。对于包括世界性分布物种(湖泊海绵、穆氏艾氏海绵、河流艾氏海绵)和贝加尔湖特有物种(巴氏湖针海绵、硬壳湖针海绵、中间贝加尔海绵、真菌形贝加尔海绵、纸质苏氏海绵)在内的八个海绵物种,测定了不同硅酸蛋白亚型的17个基因片段序列。结果表明,世界性分布海绵和贝加尔湖特有海绵在基因结构上彼此不同(内含子长度不同)。在贝加尔湖海绵中,硅酸蛋白α1的内含子长度变化最大,而硅酸蛋白α4最保守。对硅酸蛋白氨基酸序列进行系统发育分析能够识别不同的硅酸蛋白亚型,这些亚型在系统发育树上确实分属于四个簇。对外显子-内含子序列进行系统发育分析使得在簇中区分不同海绵物种成为可能。

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