Department of Molecular Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Canada.
Nucleic Acids Res. 2012 Jan;40(2):801-12. doi: 10.1093/nar/gkr747. Epub 2011 Sep 28.
Localization of the P1 plasmid requires two proteins, ParA and ParB, which act on the plasmid partition site, parS. ParB is a site-specific DNA-binding protein and ParA is a Walker-type ATPase with non-specific DNA-binding activity. In vivo ParA binds the bacterial nucleoid and forms dynamic patterns that are governed by the ParB-parS partition complex on the plasmid. How these interactions drive plasmid movement and localization is not well understood. Here we have identified a large protein-DNA complex in vitro that requires ParA, ParB and ATP, and have characterized its assembly by sucrose gradient sedimentation and light scattering assays. ATP binding and hydrolysis mediated the assembly and disassembly of this complex, while ADP antagonized complex formation. The complex was not dependent on, but was stabilized by, parS. The properties indicate that ParA and ParB are binding and bridging multiple DNA molecules to create a large meshwork of protein-DNA molecules that involves both specific and non-specific DNA. We propose that this complex represents a dynamic adaptor complex between the plasmid and nucleoid, and further, that this interaction drives the redistribution of partition proteins and the plasmid over the nucleoid during partition.
P1 质粒的定位需要两种蛋白质,ParA 和 ParB,它们作用于质粒的分配位点 parS。ParB 是一种特定于 DNA 的结合蛋白,ParA 是一种具有非特异性 DNA 结合活性的 Walker 型 ATP 酶。在体内,ParA 结合细菌核质并形成动态模式,这种模式受质粒上的 ParB-parS 分配复合物的控制。这些相互作用如何驱动质粒的运动和定位尚不清楚。在这里,我们在体外鉴定了一种需要 ParA、ParB 和 ATP 的大型蛋白质-DNA 复合物,并通过蔗糖梯度沉降和光散射测定法对其组装进行了表征。ATP 结合和水解介导了该复合物的组装和拆卸,而 ADP 拮抗了复合物的形成。该复合物不依赖于 parS,但稳定了 parS。这些特性表明,ParA 和 ParB 结合并桥接多个 DNA 分子,形成一个涉及特异性和非特异性 DNA 的大型蛋白质-DNA 分子网格。我们提出,该复合物代表了质粒和核质之间的动态衔接复合物,进一步表明这种相互作用驱动了分配过程中分配蛋白和质粒在核质上的重新分布。