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细菌 DNA 分离 ATP 酶丝的结构揭示了 ParA 在 DNA 结合时的构象灵活性。

The structure of the bacterial DNA segregation ATPase filament reveals the conformational plasticity of ParA upon DNA binding.

机构信息

Department of Molecular Biology and Biotechnology, the University of Sheffield, Sheffield, UK.

Ernst-Ruska centre 3, Forschungszentrum Jülich, Jülich, Germany.

出版信息

Nat Commun. 2021 Aug 27;12(1):5166. doi: 10.1038/s41467-021-25429-2.

Abstract

The efficient segregation of replicated genetic material is an essential step for cell division. Bacterial cells use several evolutionarily-distinct genome segregation systems, the most common of which is the type I Par system. It consists of an adapter protein, ParB, that binds to the DNA cargo via interaction with the parS DNA sequence; and an ATPase, ParA, that binds nonspecific DNA and mediates cargo transport. However, the molecular details of how this system functions are not well understood. Here, we report the cryo-EM structure of the Vibrio cholerae ParA2 filament bound to DNA, as well as the crystal structures of this protein in various nucleotide states. These structures show that ParA forms a left-handed filament on DNA, stabilized by nucleotide binding, and that ParA undergoes profound structural rearrangements upon DNA binding and filament assembly. Collectively, our data suggest the structural basis for ParA's cooperative binding to DNA and the formation of high ParA density regions on the nucleoid.

摘要

复制遗传物质的有效分离是细胞分裂的一个重要步骤。细菌细胞使用几种进化上不同的基因组分离系统,其中最常见的是 I 型 Par 系统。它由一个衔接蛋白 ParB 组成,通过与 parS DNA 序列的相互作用结合到 DNA 货物上;和一个 ATP 酶 ParA,它结合非特异性 DNA 并介导货物运输。然而,这个系统如何运作的分子细节还不是很清楚。在这里,我们报告了与 DNA 结合的霍乱弧菌 ParA2 细丝的冷冻电镜结构,以及该蛋白在各种核苷酸状态下的晶体结构。这些结构表明,ParA 在 DNA 上形成左手螺旋丝,由核苷酸结合稳定,并且 ParA 在 DNA 结合和丝组装时经历深刻的结构重排。总的来说,我们的数据表明了 ParA 与 DNA 协同结合和在核体上形成高 ParA 密度区域的结构基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/66a7/8397727/8dffc2df13e5/41467_2021_25429_Fig1_HTML.jpg

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