National Research Centre on Plant Biotechnology, Indian Agricultural Research Institute, New Delhi 110012, India.
Database (Oxford). 2011 Sep 30;2011:bar037. doi: 10.1093/database/bar037. Print 2011.
The QlicRice database is designed to host publicly accessible, abiotic stress responsive quantitative trait loci (QTLs) in rice (Oryza sativa) and their corresponding sequenced gene loci. It provides a platform for the data mining of abiotic stress responsive QTLs, as well as browsing and annotating associated traits, their location on a sequenced genome, mapped expressed sequence tags (ESTs) and tissue and growth stage-specific expressions on the whole genome. Information on QTLs related to abiotic stresses and their corresponding loci from a genomic perspective has not yet been integrated on an accessible, user-friendly platform. QlicRice offers client-responsive architecture to retrieve meaningful biological information--integrated and named 'Qlic Search'--embedded in a query phrase autocomplete feature, coupled with multiple search options that include trait names, genes and QTL IDs. A comprehensive physical and genetic map and vital statistics have been provided in a graphical manner for deciphering the position of QTLs on different chromosomes. A convenient and intuitive user interface have been designed to help users retrieve associations to agronomically important QTLs on abiotic stress response in rice. Database URL: http://nabg.iasri.res.in:8080/qlic-rice/.
QlicRice 数据库旨在存储公开可访问的、对非生物胁迫有反应的水稻（Oryza sativa）数量性状位点（QTL）及其相应的测序基因座。它为非生物胁迫响应 QTL 的数据挖掘提供了一个平台，同时还可以浏览和注释相关性状、它们在测序基因组上的位置、映射的表达序列标签（EST）以及整个基因组中组织和生长阶段特异性的表达。从基因组学的角度来看，关于非生物胁迫的 QTL 及其相应的基因座的信息尚未整合到一个可访问、用户友好的平台上。QlicRice 提供了客户响应式架构，以检索有意义的生物信息——集成并命名为“Qlic Search”——嵌入在查询短语自动完成功能中，同时还提供了多种搜索选项，包括性状名称、基因和 QTL ID。综合的物理和遗传图谱以及重要的统计数据以图形方式提供，以破译不同染色体上 QTL 的位置。为了帮助用户检索与水稻非生物胁迫响应中农艺重要 QTL 的关联，我们设计了一个方便直观的用户界面。数据库网址：http://nabg.iasri.res.in:8080/qlic-rice/。
