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多维定向固态 NMR 实验可实现对在磁场定向脂质双层中均匀 15N 标记的完整膜蛋白进行顺序赋值。

Multidimensional oriented solid-state NMR experiments enable the sequential assignment of uniformly 15N labeled integral membrane proteins in magnetically aligned lipid bilayers.

机构信息

Department of Chemistry, University of Minnesota, Minneapolis, MN 55455-0431, USA.

出版信息

J Biomol NMR. 2011 Nov;51(3):339-46. doi: 10.1007/s10858-011-9571-8.

Abstract

Oriented solid-state NMR is the most direct methodology to obtain the orientation of membrane proteins with respect to the lipid bilayer. The method consists of measuring (1)H-(15)N dipolar couplings (DC) and (15)N anisotropic chemical shifts (CSA) for membrane proteins that are uniformly aligned with respect to the membrane bilayer. A significant advantage of this approach is that tilt and azimuthal (rotational) angles of the protein domains can be directly derived from analytical expression of DC and CSA values, or, alternatively, obtained by refining protein structures using these values as harmonic restraints in simulated annealing calculations. The Achilles' heel of this approach is the lack of suitable experiments for sequential assignment of the amide resonances. In this Article, we present a new pulse sequence that integrates proton driven spin diffusion (PDSD) with sensitivity-enhanced PISEMA in a 3D experiment ([(1)H,(15)N]-SE-PISEMA-PDSD). The incorporation of 2D (15)N/(15)N spin diffusion experiments into this new 3D experiment leads to the complete and unambiguous assignment of the (15)N resonances. The feasibility of this approach is demonstrated for the membrane protein sarcolipin reconstituted in magnetically aligned lipid bicelles. Taken with low electric field probe technology, this approach will propel the determination of sequential assignment as well as structure and topology of larger integral membrane proteins in aligned lipid bilayers.

摘要

定向固态 NMR 是获得膜蛋白相对于脂质双层取向的最直接方法。该方法包括测量(1)H-(15)N 偶极耦合(DC)和(15)N 各向异性化学位移(CSA),这些膜蛋白在相对于脂质双层均匀排列。该方法的一个显著优势是,可以直接从 DC 和 CSA 值的分析表达式或通过使用这些值作为模拟退火计算中的调和约束来细化蛋白质结构来直接得出蛋白质结构域的倾斜和方位(旋转)角度。该方法的致命弱点是缺乏适合酰胺共振顺序分配的实验。在本文中,我们提出了一种新的脉冲序列,该序列将质子驱动的自旋扩散(PDSD)与灵敏度增强的 PISEMA 集成在 3D 实验中[(1)H,(15)N]-SE-PISEMA-PDSD。将 2D(15)N/(15)N 自旋扩散实验纳入此新 3D 实验中,可实现(15)N 共振的完全和明确分配。该方法已在磁定向脂质双体中重组的肌浆蛋白中得到证明。与低电场探针技术结合使用,该方法将推动在定向脂质双层中确定较大的整合膜蛋白的顺序分配以及结构和拓扑结构。

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