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利用热补偿分离局域场实验提高定向膜蛋白谱的质量。

Improving the quality of oriented membrane protein spectra using heat-compensated separated local field experiments.

机构信息

Department of Biochemistry, Molecular Biology, and Biophysics, University of Minnesota, Minneapolis, MN, 55455, USA.

Department of Chemistry, University of Minnesota, Minneapolis, MN, 55455, USA.

出版信息

J Biomol NMR. 2019 Nov;73(10-11):617-624. doi: 10.1007/s10858-019-00273-1. Epub 2019 Aug 28.

Abstract

Oriented sample solid-state NMR (OS-ssNMR) spectroscopy is a powerful technique to determine the topology of membrane proteins in oriented lipid bilayers. Separated local field (SLF) experiments are central to this technique as they provide first-order orientational restraints, i.e., dipolar couplings and anisotropic chemical shifts. Despite the use of low-E (or E-free) probes, the heat generated during the execution of 2D and 3D SLF pulse sequences causes sizeable line-shape distortions. Here, we propose a new heat-compensated SE-SAMPI4 (hcSE-SAMPI4) pulse sequence that holds the temperature constant for the duration of the experiment. This modification of the SE-SAMPI4 results in sharper and more intense resonances without line-shape distortions. The spectral improvements are even more apparent when paramagnetic relaxation agents are used to speed up data collection. We tested the hcSE-SAMPI4 pulse sequence on a single-span membrane protein, sarcolipin (SLN), reconstituted in magnetically aligned lipid bicelles. In addition to eliminating peak distortions, the hcSE-SAMPI4 experiment increased the average signal-to-noise ratio by 20% with respect to the original SE-SAMPI4.

摘要

定向样品固态 NMR(OS-ssNMR)光谱学是一种强大的技术,可用于确定定向脂质双层中膜蛋白的拓扑结构。分离局部场(SLF)实验是该技术的核心,因为它们提供了一阶取向约束,即偶极耦合和各向异性化学位移。尽管使用了低 E(或无 E)探头,但在执行 2D 和 3D SLF 脉冲序列期间产生的热量会导致相当大的谱线形状失真。在这里,我们提出了一种新的热补偿 SE-SAMPI4(hcSE-SAMPI4)脉冲序列,该序列可在实验过程中保持温度恒定。SE-SAMPI4 的这种改进导致共振更尖锐、更强,没有谱线形状失真。当使用顺磁弛豫剂来加速数据采集时,谱线的改善更加明显。我们在磁性排列的脂质双体中重组的单跨膜蛋白肌浆蛋白(SLN)上测试了 hcSE-SAMPI4 脉冲序列。除了消除峰形失真外,hcSE-SAMPI4 实验还使原始 SE-SAMPI4 的平均信噪比提高了 20%。

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本文引用的文献

6
Applications of NMR to membrane proteins.核磁共振在膜蛋白研究中的应用。
Arch Biochem Biophys. 2017 Aug 15;628:92-101. doi: 10.1016/j.abb.2017.05.011. Epub 2017 May 18.

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