Department of Control and Dynamical Systems, Division of Engineering and Applied Science, California Institute of Technology, Pasadena, California, United States of America.
PLoS One. 2011;6(9):e25102. doi: 10.1371/journal.pone.0025102. Epub 2011 Sep 29.
Under conditions of nutrient limitation, Bacillus subtilis cells terminally differentiate into a dormant spore state. Progression to sporulation is controlled by a genetic circuit consisting of a phosphorelay embedded in multiple transcriptional feedback loops, which is used to activate the master regulator Spo0A by phosphorylation. These transcriptional regulatory interactions are "bandpass"-like, in the sense that activation occurs within a limited band of Spo0A∼P concentrations. Additionally, recent results show that the phosphorelay activation occurs in pulses, in a cell-cycle dependent fashion. However, the impact of these pulsed bandpass interactions on the circuit dynamics preceding sporulation remains unclear. In order to address this question, we measured key features of the bandpass interactions at the single-cell level and analyzed them in the context of a simple mathematical model. The model predicted the emergence of a delayed phase shift between the pulsing activity of the different sporulation genes, as well as the existence of a stable state, with elevated Spo0A activity but no sporulation, embedded within the dynamical structure of the system. To test the model, we used time-lapse fluorescence microscopy to measure dynamics of single cells initiating sporulation. We observed the delayed phase shift emerging during the progression to sporulation, while a re-engineering of the sporulation circuit revealed behavior resembling the predicted additional state. These results show that periodically-driven bandpass feedback loops can give rise to complex dynamics in the progression towards sporulation.
在营养限制条件下,枯草芽孢杆菌细胞最终分化为休眠的孢子状态。孢子形成的进程受一个由多个转录反馈回路嵌入的磷酸传递系统控制,该系统用于通过磷酸化激活主调控因子 Spo0A。这些转录调控相互作用是“带通”式的,即 Spo0A∼P 浓度的激活发生在有限的范围内。此外,最近的研究结果表明,磷酸传递系统的激活以细胞周期依赖的脉冲方式发生。然而,这些脉冲带通相互作用对孢子形成前的电路动力学的影响尚不清楚。为了解决这个问题,我们在单细胞水平上测量了带通相互作用的关键特征,并在一个简单的数学模型中对其进行了分析。该模型预测了不同孢子形成基因的脉冲活动之间会出现延迟的相位偏移,以及在系统动力学结构中存在一个稳定状态,即 Spo0A 活性升高但没有孢子形成。为了验证该模型,我们使用延时荧光显微镜测量了开始进行孢子形成的单细胞的动力学。我们观察到在向孢子形成的进展过程中出现了延迟的相位偏移,而对孢子形成电路的重新设计揭示了类似于预测的附加状态的行为。这些结果表明,周期性驱动的带通反馈回路可以在向孢子形成的进展中产生复杂的动力学。