肺炎链球菌分离株 IS7493 的全基因组序列。
Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493.
机构信息
Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada.
出版信息
J Bacteriol. 2011 Nov;193(21):6102-3. doi: 10.1128/JB.06075-11.
Abstract
Streptococcus pseudopneumoniae is a member of the viridans group streptococci (VGS) whose pathogenic significance is unclear. We announce the complete genome sequence of S. pseudopneumoniae IS7493. The genome sequence will assist in the characterization of this new organism and facilitate the development of accurate diagnostic assays to distinguish it from Streptococcus pneumoniae and Streptococcus mitis.
摘要
肺炎链球菌是草绿色链球菌（VGS）群的一员，其致病性尚不清楚。我们宣布肺炎链球菌 IS7493 的完整基因组序列。该基因组序列将有助于该新生物体的特征描述，并有助于开发准确的诊断检测方法，将其与肺炎链球菌和酿脓链球菌区分开来。
相似文献
1
Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493.肺炎链球菌分离株 IS7493 的全基因组序列。
J Bacteriol. 2011 Nov;193(21):6102-3. doi: 10.1128/JB.06075-11.
2
Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics.伪肺炎链球菌的比较基因组分析为毒力和共生动态提供了见解。
PLoS One. 2013 Jun 19;8(6):e65670. doi: 10.1371/journal.pone.0065670. Print 2013.
3
Isolation of Streptococcus tigurinus - a novel member of Streptococcus mitis group from a case of periodontitis.从一例牙周炎病例中分离出缓症链球菌群新成员——蒂氏链球菌。
FEMS Microbiol Lett. 2014 Aug;357(2):131-5. doi: 10.1111/1574-6968.12519. Epub 2014 Jul 10.
4
Identification of Streptococcus pseudopneumoniae and other mitis group streptococci using matrix assisted laser desorption/ionization - time of flight mass spectrometry.使用基质辅助激光解吸/电离飞行时间质谱法鉴定假肺炎链球菌和其他缓症链球菌群
Diagn Microbiol Infect Dis. 2021 Nov;101(3):115487. doi: 10.1016/j.diagmicrobio.2021.115487. Epub 2021 Jul 10.
5
Streptococcus pseudopneumoniae identification by pherotype: a method to assist understanding of a potentially emerging or overlooked pathogen.表型鉴定肺炎链球菌：一种帮助理解潜在新兴或被忽视病原体的方法。
J Clin Microbiol. 2012 May;50(5):1684-90. doi: 10.1128/JCM.00131-12. Epub 2012 Feb 29.
6
Development of a real-time PCR assay for the specific detection and identification of Streptococcus pseudopneumoniae using the recA gene.基于 recA 基因的实时 PCR 检测方法用于肺炎链球菌的特异性检测和鉴定
Clin Microbiol Infect. 2012 Nov;18(11):1089-96. doi: 10.1111/j.1469-0691.2011.03684.x. Epub 2011 Oct 25.
7
Phenotypic and genomic characterization of pneumococcus-like streptococci isolated from HIV-seropositive patients.从 HIV 血清阳性患者中分离的肺炎链球菌样链球菌的表型和基因组特征。
Microbiology (Reading). 2010 Mar;156(Pt 3):838-848. doi: 10.1099/mic.0.035345-0. Epub 2009 Dec 3.
8
Rapid and Accurate Species Identification of Mitis Group Streptococci Using the MinION Nanopore Sequencer.使用 MinION 纳米孔测序仪快速准确鉴定米氏链球菌属。
Front Cell Infect Microbiol. 2020 Jan 30;10:11. doi: 10.3389/fcimb.2020.00011. eCollection 2020.
9
Genomic Characterization of the Emerging Pathogen Streptococcus pseudopneumoniae.肺炎链球菌的新兴病原体基因组特征。
mBio. 2019 Jun 25;10(3):e01286-19. doi: 10.1128/mBio.01286-19.
10
Molecular characterization of macrolide resistance determinants [erm(B) and mef(A)] in Streptococcus pneumoniae and viridans group streptococci (VGS) isolated from adult patients with cystic fibrosis (CF).从成年囊性纤维化（CF）患者中分离出的肺炎链球菌和草绿色链球菌（VGS）中大环内酯类耐药决定因素[erm(B)和mef(A)]的分子特征
J Antimicrob Chemother. 2009 Sep;64(3):501-6. doi: 10.1093/jac/dkp213. Epub 2009 Jul 7.
引用本文的文献
1
Characterizing Plasmids in Bacteria Species Relevant to Urinary Health.鉴定与泌尿健康相关细菌物种中的质粒。
Microbiol Spectr. 2021 Dec 22;9(3):e0094221. doi: 10.1128/spectrum.00942-21.
2
Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review.常见细菌性脑膜炎病原体的分子诊断检测：叙述性综述。
EBioMedicine. 2021 Mar;65:103274. doi: 10.1016/j.ebiom.2021.103274. Epub 2021 Mar 12.
3
Impact of Laboratory Methods and Gene Targets on Detection of in Isolates and Clinical Specimens.实验室方法和基因靶点对分离株及临床标本中[具体物质未给出]检测的影响。
Rep Biochem Mol Biol. 2020 Jul;9(2):216-222. doi: 10.29252/rbmb.9.2.216.
4
Identification of Streptococcus pneumoniae by a real-time PCR assay targeting SP2020.实时 PCR 检测法针对 SP2020 鉴定肺炎链球菌。
Sci Rep. 2019 Mar 1;9(1):3285. doi: 10.1038/s41598-019-39791-1.
5
Foreign peptide triggers boost in pneumococcal metabolism and growth.外源性肽触发肺炎链球菌新陈代谢和生长的增强。
BMC Microbiol. 2018 Mar 27;18(1):23. doi: 10.1186/s12866-018-1167-y.
6
Strain Level Colonization Patterns during the First Year of Life.生命第一年的菌株水平定植模式。
Front Microbiol. 2017 Sep 6;8:1661. doi: 10.3389/fmicb.2017.01661. eCollection 2017.
7
Streptococcus pneumoniae detects and responds to foreign bacterial peptide fragments in its environment.肺炎链球菌可以检测和响应其环境中外来的细菌肽片段。
Open Biol. 2014 Apr 9;4(4):130224. doi: 10.1098/rsob.130224.
8
Comparative Genomic Analyses of Streptococcus pseudopneumoniae Provide Insight into Virulence and Commensalism Dynamics.伪肺炎链球菌的比较基因组分析为毒力和共生动态提供了见解。
PLoS One. 2013 Jun 19;8(6):e65670. doi: 10.1371/journal.pone.0065670. Print 2013.
9
Disease isolates of Streptococcus pseudopneumoniae and non-typeable S. pneumoniae presumptively identified as atypical S. pneumoniae in Spain.在西班牙，疑似为非典型肺炎链球菌的肺炎链球菌病分离株和未分型肺炎链球菌。
PLoS One. 2013;8(2):e57047. doi: 10.1371/journal.pone.0057047. Epub 2013 Feb 21.
10
Characterization of recombinant fluoroquinolone-resistant pneumococcus-like isolates.重组氟喹诺酮类耐药肺炎球菌样分离株的特性。
Antimicrob Agents Chemother. 2013 Jan;57(1):254-60. doi: 10.1128/AAC.01357-12. Epub 2012 Oct 31.
本文引用的文献
1
Misidentification of alpha-hemolytic streptococci by routine tests in clinical practice.常规检测在临床实践中对甲型溶血性链球菌的错误鉴定。
Infect Genet Evol. 2011 Oct;11(7):1709-15. doi: 10.1016/j.meegid.2011.07.010. Epub 2011 Jul 21.
2
progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement.渐进紫：具有基因增益、缺失和重排的多基因组比对。
PLoS One. 2010 Jun 25;5(6):e11147. doi: 10.1371/journal.pone.0011147.
3
Detection of large numbers of pneumococcal virulence genes in streptococci of the mitis group.在米氏链球菌群中检测到大量肺炎球菌毒力基因。
J Clin Microbiol. 2010 Aug;48(8):2762-9. doi: 10.1128/JCM.01746-09. Epub 2010 Jun 2.
4
Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance.高耐青霉素、多重耐药类肺炎球菌样菌株在葡萄牙奥埃拉斯地区儿童中的定植情况：基因组特征及其对监测的影响。
J Clin Microbiol. 2010 Jan;48(1):238-46. doi: 10.1128/JCM.01313-09. Epub 2009 Nov 11.
5
The RAST Server: rapid annotations using subsystems technology.RAST服务器：使用子系统技术进行快速注释。
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
6
The Seventh International Conference on the Genetics of Streptococci, Lactococci, and Enterococci.第七届链球菌、乳球菌和肠球菌遗传学国际会议
J Bacteriol. 2007 Feb;189(4):1209-18. doi: 10.1128/JB.01363-06. Epub 2006 Sep 29.
7
Incidence and pathogenic effect of Streptococcus pseudopneumoniae.伪肺炎链球菌的发病率及致病作用
J Clin Microbiol. 2006 Jun;44(6):2240-1. doi: 10.1128/JCM.02643-05.
8
Accuracy of phenotypic and genotypic testing for identification of Streptococcus pneumoniae and description of Streptococcus pseudopneumoniae sp. nov.用于鉴定肺炎链球菌的表型和基因型检测的准确性以及新种伪肺炎链球菌的描述
J Clin Microbiol. 2004 Oct;42(10):4686-96. doi: 10.1128/JCM.42.10.4686-4696.2004.
9
Mauve: multiple alignment of conserved genomic sequence with rearrangements.Mauve：带重排的保守基因组序列多重比对。
Genome Res. 2004 Jul;14(7):1394-403. doi: 10.1101/gr.2289704.
10
Optochin resistance in Streptococcus pneumoniae: mechanism, significance, and clinical implications.肺炎链球菌对奥普托欣的耐药性：机制、意义及临床影响
J Infect Dis. 2001 Sep 1;184(5):582-90. doi: 10.1086/322803. Epub 2001 Jul 26.
Zotero 插件