肺炎链球菌分离株 IS7493 的全基因组序列。
Whole-genome sequence of Streptococcus pseudopneumoniae isolate IS7493.
机构信息
Department of Laboratory Medicine and Pathobiology, University of Toronto, Toronto, Canada.
出版信息
J Bacteriol. 2011 Nov;193(21):6102-3. doi: 10.1128/JB.06075-11.
Abstract
Streptococcus pseudopneumoniae is a member of the viridans group streptococci (VGS) whose pathogenic significance is unclear. We announce the complete genome sequence of S. pseudopneumoniae IS7493. The genome sequence will assist in the characterization of this new organism and facilitate the development of accurate diagnostic assays to distinguish it from Streptococcus pneumoniae and Streptococcus mitis.
摘要
肺炎链球菌是草绿色链球菌（VGS）群的一员，其致病性尚不清楚。我们宣布肺炎链球菌 IS7493 的完整基因组序列。该基因组序列将有助于该新生物体的特征描述，并有助于开发准确的诊断检测方法，将其与肺炎链球菌和酿脓链球菌区分开来。
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2
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PLoS One. 2010 Jun 25;5(6):e11147. doi: 10.1371/journal.pone.0011147.
3
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J Clin Microbiol. 2010 Aug;48(8):2762-9. doi: 10.1128/JCM.01746-09. Epub 2010 Jun 2.
4
Highly penicillin-resistant multidrug-resistant pneumococcus-like strains colonizing children in Oeiras, Portugal: genomic characteristics and implications for surveillance.
J Clin Microbiol. 2010 Jan;48(1):238-46. doi: 10.1128/JCM.01313-09. Epub 2009 Nov 11.
5
The RAST Server: rapid annotations using subsystems technology.
BMC Genomics. 2008 Feb 8;9:75. doi: 10.1186/1471-2164-9-75.
6
The Seventh International Conference on the Genetics of Streptococci, Lactococci, and Enterococci.
J Bacteriol. 2007 Feb;189(4):1209-18. doi: 10.1128/JB.01363-06. Epub 2006 Sep 29.
7
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J Clin Microbiol. 2006 Jun;44(6):2240-1. doi: 10.1128/JCM.02643-05.
8
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J Clin Microbiol. 2004 Oct;42(10):4686-96. doi: 10.1128/JCM.42.10.4686-4696.2004.
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