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对羟基苯丙酮酸 2,3-双加氧酶的中间产物:底物之间易于发生电子转移。

Oxy intermediates of homoprotocatechuate 2,3-dioxygenase: facile electron transfer between substrates.

机构信息

Department of Biochemistry, Molecular Biology and Biophysics, University of Minnesota, Minneapolis, Minnesota 55455, United States.

出版信息

Biochemistry. 2011 Nov 29;50(47):10262-74. doi: 10.1021/bi201436n. Epub 2011 Nov 1.

Abstract

Substrates homoprotocatechuate (HPCA) and O(2) bind to the Fe(II) of homoprotocatechuate 2,3-dioxygenase (FeHPCD) in adjacent coordination sites. Transfer of an electron(s) from HPCA to O(2) via the iron is proposed to activate the substrates for reaction with each other to initiate aromatic ring cleavage. Here, rapid-freeze-quench methods are used to trap and spectroscopically characterize intermediates in the reactions of the HPCA complexes of FeHPCD and the variant His200Asn (FeHPCD−HPCA and H200N−HPCA, respectively) with O(2). A blue intermediate forms within 20 ms of mixing of O(2) with H200N−HPCA (H200N(Int1)(HPCA)). Parallel mode electron paramagnetic resonance and Mössbauer spectroscopies show that this intermediate contains high-spin Fe(III) (S = 5/2) antiferromagnetically coupled to a radical (S(R) = 1/2) to yield an S = 2 state. Together, optical and Mössbauer spectra of the intermediate support assignment of the radical as an HPCA semiquinone, implying that oxygen is bound as a (hydro)peroxo ligand. H200N(Int1)(HPCA) decays over the next 2 s, possibly through an Fe(II) intermediate (H200N(Int2)(HPCA)), to yield the product and the resting Fe(II) enzyme. Reaction of FeHPCD−HPCA with O(2) results in rapid formation of a colorless Fe(II) intermediate (FeHPCD(Int1)(HPCA)). This species decays within 1 s to yield the product and the resting enzyme. The absence of a chromophore from a semiquinone or evidence of a spin-coupled species in FeHPCD(Int1)(HPCA) suggests it is an intermediate occurring after O(2) activation and attack. The similar Mössbauer parameters for FeHPCD(Int1)(HPCA) and H200N(Int2)(HPCA) suggest these are similar intermediates. The results show that transfer of an electron from the substrate to the O(2) via the iron does occur, leading to aromatic ring cleavage.

摘要

底物对羟基苯丙酮酸(HPCA)和 O(2)结合到对羟基苯丙酮酸 2,3-双加氧酶(FeHPCD)的铁上相邻配位位。据提议,HPCA 中的电子(s)通过铁转移到 O(2)中,以激活底物彼此反应,启动芳环裂解。在这里,快速冷冻淬火方法用于捕获和光谱特征鉴定 HPCA 复合物与 O(2)反应的中间产物的 FeHPCD 和变体 His200Asn(FeHPCD−HPCA 和 H200N−HPCA,分别)。将 O(2)与 H200N−HPCA 混合 20 ms 内形成蓝色中间物(H200N(Int1)(HPCA))。平行模式电子顺磁共振和穆斯堡尔谱学表明,该中间物包含高自旋 Fe(III)(S = 5/2),与自由基(S(R) = 1/2)反铁磁耦合,生成 S = 2 态。光学和穆斯堡尔光谱的中间物共同支持自由基被分配为 HPCA 半醌,表明氧结合为(氢)过氧配体。H200N(Int1)(HPCA) 在接下来的 2 s 内衰减,可能通过 Fe(II)中间物(H200N(Int2)(HPCA)),生成产物和静止的 Fe(II)酶。FeHPCD−HPCA 与 O(2)反应快速形成无色 Fe(II)中间物(FeHPCD(Int1)(HPCA))。该物质在 1 s 内衰减,生成产物和静止的酶。在 FeHPCD(Int1)(HPCA)中没有半醌的发色团或自旋耦合物种的证据表明它是在 O(2)激活和攻击之后发生的中间物。FeHPCD(Int1)(HPCA) 和 H200N(Int2)(HPCA) 的相似穆斯堡尔参数表明这些是相似的中间物。结果表明,电子确实从底物通过铁转移到 O(2),导致芳环裂解。

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本文引用的文献

2
A hyperactive cobalt-substituted extradiol-cleaving catechol dioxygenase.
J Biol Inorg Chem. 2011 Feb;16(2):341-55. doi: 10.1007/s00775-010-0732-0. Epub 2010 Dec 14.
3
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Proc Natl Acad Sci U S A. 2010 Sep 28;107(39):16788-93. doi: 10.1073/pnas.1010015107. Epub 2010 Sep 13.
4
Electron paramagnetic resonance detection of intermediates in the enzymatic cycle of an extradiol dioxygenase.
J Am Chem Soc. 2008 Nov 5;130(44):14465-7. doi: 10.1021/ja8052255. Epub 2008 Oct 8.
5
Swapping metals in Fe- and Mn-dependent dioxygenases: evidence for oxygen activation without a change in metal redox state.
Proc Natl Acad Sci U S A. 2008 May 27;105(21):7347-52. doi: 10.1073/pnas.0711179105. Epub 2008 May 20.
6
Versatility of biological non-heme Fe(II) centers in oxygen activation reactions.
Nat Chem Biol. 2008 Mar;4(3):186-93. doi: 10.1038/nchembio.71.
7
Hydrogen peroxide dependent cis-dihydroxylation of benzoate by fully oxidized benzoate 1,2-dioxygenase.
Biochemistry. 2007 Jul 10;46(27):8004-16. doi: 10.1021/bi700120j. Epub 2007 Jun 14.
8
Finding intermediates in the O2 activation pathways of non-heme iron oxygenases.
Acc Chem Res. 2007 Jul;40(7):475-83. doi: 10.1021/ar700052v. Epub 2007 Jun 14.
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10
The ins and outs of ring-cleaving dioxygenases.
Crit Rev Biochem Mol Biol. 2006 Jul-Aug;41(4):241-67. doi: 10.1080/10409230600817422.

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