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非绝热分子动力学模拟揭示维生素 D 光合作用的细节。

Unravelling the details of vitamin D photosynthesis by non-adiabatic molecular dynamics simulations.

机构信息

Department of Chemistry, University of California, Irvine, 1102 Natural Sciences 2, Irvine, California 92697-2025, USA.

出版信息

Phys Chem Chem Phys. 2011 Dec 21;13(47):20986-98. doi: 10.1039/c1cp21292c. Epub 2011 Oct 21.

DOI:10.1039/c1cp21292c
PMID:22020179
Abstract

We investigate the photodynamics of vitamin D derivatives by a fully analytical implementation of the linear response time-dependent density functional theory surface hopping method (LR-TDDFT-SH). Our study elucidates the dynamics of the processes involved in vitamin D formation at the molecular level and with femtosecond resolution. We explain the major experimental findings and provide new insights that cannot directly be obtained from experiments: firstly, we investigate the dynamics of the photoinduced ring-opening of provitamin D (Pro) and cyclohexadiene (CHD) and the subsequent rotational isomerization. In agreement with recent experiments and CC2 calculations, only the bright S(1) state is involved in the ring-opening reaction. Our calculations confirm the experimentally reported 5 : 1 ratio between the excited state lifetimes of Pro and CHD. The longer lifetimes of Pro are attributed to steric constraints of the steroid skeleton and to temperature effects, both emerging directly from our simulations. For CHD and Pro, we present an explanation of the biexponential decay recently reported by Sension and coworkers [Tang et al., J. Phys. Chem., 2011, 134, 104503]: our calculations suggest that the fast and slow components arise from a reactive and an unreactive reaction pathway, respectively. Secondly, we assess the wavelength dependent photochemistry of previtamin D (Pre). Using replica exchange molecular dynamics we sample the Pre conformers present at thermal equilibrium. Based on this ensemble we explain the conformation dependent absorption and the essential features of Pre photochemistry. Consistent with the experiments, we find ring-closure to occur mostly after excitation of the cZc conformers and at lower energies, whereas Z/E isomerization of the central double bond preferably occurs after excitation at higher energies. For the isomerization we provide the first theoretical evidence of the proposed hula-twist mechanism. Our results show that LR-TDDFT-SH is a highly valuable tool for studying the photochemistry of moderately large systems, even though challenges remain in the vicinity of conical intersections.

摘要

我们通过完全解析实现的线性响应含时密度泛函理论表面跳跃方法(LR-TDDFT-SH)研究了维生素 D 衍生物的光动力学。我们的研究阐明了维生素 D 形成过程中涉及的分子水平和飞秒分辨率的动力学。我们解释了主要的实验发现,并提供了无法直接从实验中获得的新见解:首先,我们研究了前维生素 D(Pro)和环己二烯(CHD)的光诱导开环以及随后的旋转异构化的动力学。与最近的实验和 CC2 计算一致,只有明亮的 S(1)态参与开环反应。我们的计算证实了实验报道的 Pro 和 CHD 激发态寿命的 5:1 比例。Pro 较长的寿命归因于甾体骨架的空间位阻和温度效应,这两者都直接来自于我们的模拟。对于 CHD 和 Pro,我们提出了 Sension 及其同事最近报道的双指数衰减的解释[Tang 等人,J. Phys. Chem.,2011,134,104503]:我们的计算表明,快和慢分量分别来自反应性和非反应性反应途径。其次,我们评估了 previtamin D(Pre)的波长相关光化学。使用复制交换分子动力学,我们对热平衡下存在的 Pre 构象进行采样。基于该集合,我们解释了构象相关的吸收和 Pre 光化学的基本特征。与实验一致,我们发现环闭合主要发生在 cZc 构象被激发后,且能量较低,而中央双键的 Z/E 异构化则在较高能量激发后更容易发生。对于异构化,我们提供了该提议的“hula-twist”机制的第一个理论证据。我们的结果表明,LR-TDDFT-SH 是研究中等大小体系光化学的非常有价值的工具,尽管在圆锥交叉附近仍然存在挑战。

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