Suppr超能文献

解析金(I)对肽中二硫键断裂的特异性作用:DFT 研究。

Unraveling gold(I)-specific action towards peptidic disulfide cleavage: a DFT investigation.

机构信息

Laboratoire de Chimie, UMR CNRS, Institut de Chimie de Lyon, Universit de Lyon, Ecole normale suprieure de Lyon, France.

出版信息

Chemphyschem. 2011 Oct 4;12(14):2596-2603. doi: 10.1002/cphc.201100336.

Abstract

Ground-state disulfide dissociation is a target of prime importance in structural biochemistry. A main difficulty consists in avoiding competition with carbon–sulfur and backbone scission pathways. In tandem mass spectrometry, such selectivity is afforded using transition elements or coinage-metal ions as catalyst. Yet, the underlying gas-phase mechanistic details remain poorly understood. Gold(I)-assisted disulfide cleavage is investigated by means of DFT calculations, to elucidate the highly selective and specific catalytic action of this transition-metal cation, a most promising one in tandem mass spectrometry. The preferential cleavage of sulfur–sulfur versus carbon–sulfur linkages on dimethyldisulfide, taken as a prototypical aliphatic compound, is rationalized on the basis of molecular orbital arguments. Secondly, it is revealed that the disulfide dissociation profile is dramatically impacted by a peptidic environment. Calculations on L,L-cystine derivatives show two main factors: the topological frustration for an embedded -CH(2)-S-S-CH(2)- motif induces a 5 kcal mol(-1) penalty, whereas electrophilic assistance via complexation of nitrogen and oxygen atoms lowers activation barriers by a factor of 3. S-S weakening is both thermodynamically and kinetically driven by the versatile coordination mode of gold(I). The influence of amine-terminus group protonation is finally sketched: it gives rise to an intermediate reactivity. This study sheds lights on the key action of the peptidic environment in tuning the dissociation profile in the presence of this transition-metal monocation.

摘要

基态二硫键的断裂是结构生物化学中最重要的目标之一。主要的困难在于避免与碳-硫和骨架断裂途径竞争。在串联质谱中,使用过渡金属或硬币金属离子作为催化剂可以提供这种选择性。然而,其潜在的气相反应机制细节仍知之甚少。本文通过密度泛函理论(DFT)计算研究了金(I)辅助的二硫键断裂,以阐明这种过渡金属阳离子的高选择性和特异性催化作用,这是串联质谱中最有前途的一种。基于分子轨道理论,对作为典型脂肪族化合物的二甲基二硫醚的硫-硫与碳-硫键的优先断裂进行了合理的解释。其次,揭示了肽环境对二硫键解离分布有显著影响。对 L,L-胱氨酸衍生物的计算表明了两个主要因素:嵌入的-CH(2)-S-S-CH(2)-基序的拓扑受阻导致 5 kcal mol(-1)的罚分,而通过氮和氧原子的络合提供的亲电辅助将活化能垒降低了 3 倍。金(I)的多功能配位模式既从热力学上又从动力学上推动了 S-S 的削弱。最后,简述了胺端基质子化的影响:它导致了中间反应性。本研究阐明了在这种过渡金属单阳离子存在下,肽环境在调节解离分布方面的关键作用。

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验