Institut de Chimie de Lyon, Université de Lyon, UMR 5182 CNRS LCh École Normale Supérieure de Lyon, Lyon, France.
J Phys Chem B. 2011 May 26;115(20):6776-83. doi: 10.1021/jp2021566. Epub 2011 May 4.
Among the large variety of experimental techniques amenable to probe disulfide radical anions, electron paramagnetic resonance (EPR) spectroscopy provides the most definitive assignment of these versatile transient intermediates in biochemistry [Stubbe et al. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 8979-84; J. Am. Chem. Soc. 2009, 131, 200-211]. EPR parameters along both a series of 12 aliphatic 1,2-dithia-cycloalkane radical anions and a representative set of 18 short-loop peptides are investigated by means of density functional theory. While the g-tensor remains quasi-isotropic (with diagonal terms very close to 2.0, as expected for a σ* singly occupied orbital), we evidence a dramatic conformational dependence of isotropic sulfur hyperfine coupling constants (hcc). Potential energy surface exploration of the prototypical dimethyldisulfide rationalizes their 3-4-fold amplitude, with values ranging between 10 and 29 G for aliphatic moieties. Sulfur hcc's are readily decomposed into three geometrical components: intersulfur distance, dihedral, and valence angles, with the latter being predominant. Increasing (respectively decreasing) contribution of sulfur atomic s orbital to the σ* molecular orbital, with a concomitant higher (respectively weaker) density around the sulfur nuclei, can be monitored on Walsh diagrams along each degree of motion. In peptidic disulfide radical anionic systems, sulfur hcc's are dissymmetrized and span an even larger range of values, from 14 to 40 G. Again, dependence is governed by the mechanical embedding of the -CH(2)-S∴S-CH(2)- motif, this time with a noticeable contribution from the hemibond lenghtening and some punctual short-range additive electrostatic contributions. This analysis comes within the scope of a unified picture of both spectroscopy and reactivity of the mechanochemistry of disulfide hemibonds.
在适用于探测二硫自由基阴离子的各种实验技术中,电子顺磁共振(EPR)光谱为生物化学中这些多功能瞬态中间体提供了最明确的归属[Stubbe 等人,美国国家科学院院刊 1999, 96, 8979-84;美国化学学会志 2009, 131, 200-211]。通过密度泛函理论研究了一系列 12 个脂肪族 1,2-二硫杂环烷自由基阴离子和一组 18 个短环肽的 EPR 参数。虽然 g 张量仍然几乎各向同性(对角项非常接近 2.0,正如预期的σ单占据轨道一样),但我们证明了各向同性硫超精细耦合常数(hcc)的显著构象依赖性。对原型二甲二硫的势能面探索解释了它们 3-4 倍的幅度,脂肪族部分的范围在 10 到 29 G 之间。硫 hcc 可以容易地分解为三个几何成分:硫硫距离、二面角和价角,后者是主要的。随着硫原子 s 轨道对σ分子轨道的贡献增加(分别减小),以及硫核周围密度的增加(分别减弱),可以沿着每个运动自由度在 Walsh 图上进行监测。在肽中二硫自由基阴离子体系中,硫 hcc 不对称化并跨越更大的范围,从 14 到 40 G。同样,依赖性受-CH(2)-S∴S-CH(2)- 基序的机械嵌入控制,这次有明显的 hemibond 伸长贡献和一些局部短程附加静电贡献。这种分析属于二硫半键机械化学的光谱学和反应性的统一图景的范围。