Suppr超能文献

嗜热栖热菌中转位子相关膜蛋白SecDF首个周质结构域的结晶及初步X射线衍射分析

Crystallization and preliminary X-ray diffraction of the first periplasmic domain of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.

作者信息

Echizen Yuka, Tsukazaki Tomoya, Dohmae Naoshi, Ishitani Ryuichiro, Nureki Osamu

机构信息

Department of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, 2-11-16 Yayoi, Tokyo 113-0032, Japan.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1367-70. doi: 10.1107/S1744309111031885. Epub 2011 Oct 27.

Abstract

A membrane-integrated Sec component, SecDF, associates with the SecYEG protein-conducting channel and facilitates protein secretion and membrane-protein integration. SecDF contains 12 transmembrane helices and two periplasmic domains. The first periplasmic domain (P1) plays an important role in protein translocation. Here, the overexpression, purification and crystallization of the P1 domain of Thermus thermophilus SecDF are reported. The crystals diffracted X-rays to 2.3 Å resolution and belonged to space group C2, with unit-cell parameters a = 161.1, b = 35.8, c = 181.6 Å, suggesting that they contain four molecules per asymmetric unit. The initial phases were determined by the multiple-wavelength anomalous dispersion method using selenomethionine-labelled crystals.

摘要

一种膜整合型Sec组分SecDF,与SecYEG蛋白质传导通道相关联,并促进蛋白质分泌和膜蛋白整合。SecDF包含12个跨膜螺旋和两个周质结构域。第一个周质结构域(P1)在蛋白质转运中起重要作用。在此,报道了嗜热栖热菌SecDF的P1结构域的过表达、纯化和结晶。这些晶体的X射线衍射分辨率达到2.3 Å,属于空间群C2,晶胞参数为a = 161.1、b = 35.8、c = 181.6 Å,表明每个不对称单元包含四个分子。初始相位通过使用硒代甲硫氨酸标记的晶体的多波长反常色散法确定。

相似文献

1
Crystallization and preliminary X-ray diffraction of the first periplasmic domain of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Nov 1;67(Pt 11):1367-70. doi: 10.1107/S1744309111031885. Epub 2011 Oct 27.
2
Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt 4):376-80. doi: 10.1107/S1744309106007779. Epub 2006 Mar 25.
3
Structure and function of a membrane component SecDF that enhances protein export.
Nature. 2011 May 11;474(7350):235-8. doi: 10.1038/nature09980.
4
Crystallization and preliminary X-ray analysis of peptidyl-tRNA hydrolase from Thermus thermophilus HB8.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Mar 1;69(Pt 3):332-5. doi: 10.1107/S1744309113003424. Epub 2013 Feb 27.
5
Conformational variation of the translocon enhancing chaperone SecDF.
J Struct Funct Genomics. 2014 Sep;15(3):107-15. doi: 10.1007/s10969-013-9168-4. Epub 2013 Dec 25.
6
Purification, crystallization and preliminary X-ray crystallographic analysis of the C-terminal cytoplasmic domain of FlhB from Salmonella typhimurium.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jul 1;67(Pt 7):808-11. doi: 10.1107/S1744309111018938. Epub 2011 Jun 30.
7
Cloning, expression, purification, crystallization and preliminary crystallographic analysis of the putative NlpC/P60 endopeptidase, TTHA0266, from Thermus thermophilus HB8.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Nov;69(Pt 11):1291-4. doi: 10.1107/S1744309113027164. Epub 2013 Oct 30.
8
Crystallization and preliminary X-ray crystallographic studies of the small form of glucose-inhibited division protein A from Thermus thermophilus HB8.
Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):515-7. doi: 10.1107/S0907444904000721. Epub 2004 Feb 25.
10
Crystallization and preliminary X-ray diffraction studies of a DNA excision repair enzyme, UvrB, from Thermus thermophilus HB8.
Acta Crystallogr D Biol Crystallogr. 1999 Mar;55(Pt 3):704-5. doi: 10.1107/s0907444998015777.

引用本文的文献

1
Electric-Field-Induced Protein Translocation via a Conformational Transition in SecDF: An MD Study.
Biophys J. 2017 Jun 20;112(12):2520-2528. doi: 10.1016/j.bpj.2017.04.034.
2
The mechanism of protein export enhancement by the SecDF membrane component.
Biophysics (Nagoya-shi). 2011 Nov 30;7:129-133. doi: 10.2142/biophysics.7.129. eCollection 2011.
3
Dynamic interaction of the sec translocon with the chaperone PpiD.
J Biol Chem. 2014 Aug 1;289(31):21706-15. doi: 10.1074/jbc.M114.577916. Epub 2014 Jun 20.
4
Conformational variation of the translocon enhancing chaperone SecDF.
J Struct Funct Genomics. 2014 Sep;15(3):107-15. doi: 10.1007/s10969-013-9168-4. Epub 2013 Dec 25.

本文引用的文献

2
Processing of X-ray diffraction data collected in oscillation mode.
Methods Enzymol. 1997;276:307-26. doi: 10.1016/S0076-6879(97)76066-X.
3
Structure and function of a membrane component SecDF that enhances protein export.
Nature. 2011 May 11;474(7350):235-8. doi: 10.1038/nature09980.
4
The Sec translocase.
Biochim Biophys Acta. 2011 Mar;1808(3):851-65. doi: 10.1016/j.bbamem.2010.08.016. Epub 2010 Aug 27.
5
Conformational transition of Sec machinery inferred from bacterial SecYE structures.
Nature. 2008 Oct 16;455(7215):988-91. doi: 10.1038/nature07421.
6
A short history of SHELX.
Acta Crystallogr A. 2008 Jan;64(Pt 1):112-22. doi: 10.1107/S0108767307043930. Epub 2007 Dec 21.
9
Crystal structure of the translocation ATPase SecA from Thermus thermophilus reveals a parallel, head-to-head dimer.
J Mol Biol. 2006 Dec 1;364(3):248-58. doi: 10.1016/j.jmb.2006.09.061. Epub 2006 Sep 29.
10
Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus.
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2006 Apr 1;62(Pt 4):376-80. doi: 10.1107/S1744309106007779. Epub 2006 Mar 25.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验