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本文引用的文献

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Genome-wide maps of transcription regulatory elements.转录调控元件的全基因组图谱。
Wiley Interdiscip Rev Syst Biol Med. 2010 Jul-Aug;2(4):422-437. doi: 10.1002/wsbm.70.
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A matrix metalloproteinase-1/protease activated receptor-1 signaling axis promotes melanoma invasion and metastasis.基质金属蛋白酶-1/蛋白酶激活受体-1 信号轴促进黑色素瘤的侵袭和转移。
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Retinoid X receptor and peroxisome proliferator-activated receptor-gamma agonists cooperate to inhibit matrix metalloproteinase gene expression.维甲酸X受体和过氧化物酶体增殖物激活受体γ激动剂协同抑制基质金属蛋白酶基因表达。
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Chromatin loops in gene regulation.基因调控中的染色质环
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Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.ENCODE试点项目对人类基因组1%的功能元件进行鉴定与分析。
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High-resolution profiling of histone methylations in the human genome.人类基因组中组蛋白甲基化的高分辨率分析。
Cell. 2007 May 18;129(4):823-37. doi: 10.1016/j.cell.2007.05.009.
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Regulation of matrix metalloproteinase gene expression by a retinoid X receptor-specific ligand.类视黄醇X受体特异性配体对基质金属蛋白酶基因表达的调控
Arthritis Rheum. 2007 Mar;56(3):892-904. doi: 10.1002/art.22417.
9
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.人类基因组中转录启动子和增强子独特且具有预测性的染色质特征
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10
Ten years in the life of an enzyme: the story of the human MMP-13 (collagenase-3).一种酶的十年历程:人类基质金属蛋白酶-13(胶原酶-3)的故事
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人基质金属蛋白酶-13(MMP-13)的远端白细胞介素-1β(IL-1β)反应元件结合激活蛋白 1(AP-1)转录因子并调节基因表达。

Distal interleukin-1β (IL-1β) response element of human matrix metalloproteinase-13 (MMP-13) binds activator protein 1 (AP-1) transcription factors and regulates gene expression.

机构信息

Department of Biochemistry, Dartmouth Medical School, Hanover, New Hampshire 03755, USA.

出版信息

J Biol Chem. 2012 Jan 6;287(2):1189-97. doi: 10.1074/jbc.M111.264077. Epub 2011 Nov 18.

DOI:10.1074/jbc.M111.264077
PMID:22102411
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3256917/
Abstract

The collagenase matrix metalloproteinase-13 (MMP-13) plays an important role in the destruction of cartilage in arthritic joints. MMP-13 expression is strongly up-regulated in arthritis, largely because of stimulation by inflammatory cytokines such as IL-1β. Treatment of chondrocytes with IL-1β induces transcription of MMP-13 in vitro. IL-1β signaling converges upon the activator protein-1 transcription factors, which have been shown to be required for IL-1β-induced MMP-13 gene expression. Using chromatin immunoprecipitation (ChIP), we detected activator protein-1 binding within an evolutionarily conserved DNA sequence ∼20 kb 5' relative to the MMP-13 transcription start site (TSS). Also using ChIP, we detected histone modifications and binding of RNA polymerase II within this conserved region, all of which are consistent with transcriptional activation. Chromosome conformation capture indicates that chromosome looping brings this region in close proximity with the MMP-13 TSS. Finally, a luciferase reporter construct driven by a component of the conserved region demonstrated an expression pattern similar to that of endogenous MMP-13. These data suggest that a conserved region at 20 kb upstream from the MMP-13 TSS includes a distal transcriptional response element of MMP-13, which contributes to MMP-13 gene expression.

摘要

胶原酶基质金属蛋白酶-13(MMP-13)在关节炎关节中软骨的破坏中发挥重要作用。关节炎中 MMP-13 的表达强烈上调,主要是因为受到炎症细胞因子如 IL-1β 的刺激。IL-1β 处理软骨细胞可在体外诱导 MMP-13 的转录。IL-1β 信号转导汇聚到激活蛋白-1 转录因子,已证明这些转录因子是 IL-1β 诱导 MMP-13 基因表达所必需的。通过染色质免疫沉淀(ChIP),我们在 MMP-13 转录起始位点(TSS)上游约 20 kb 5'处检测到进化上保守的 DNA 序列内的激活蛋白-1 结合。同样通过 ChIP,我们在该保守区域内检测到组蛋白修饰和 RNA 聚合酶 II 的结合,所有这些都与转录激活一致。染色体构象捕获表明,染色体环化使该区域与 MMP-13 TSS 紧密接近。最后,由保守区域的组成部分驱动的荧光素酶报告基因构建体显示出与内源性 MMP-13 相似的表达模式。这些数据表明,MMP-13 TSS 上游 20 kb 的保守区域包含 MMP-13 的远端转录反应元件,有助于 MMP-13 基因表达。