Department of Chemical Engineering, Texas A&M University, College Station, TX 77843, USA.
J Mol Model. 2012 Jun;18(6):2805-11. doi: 10.1007/s00894-011-1273-3. Epub 2011 Nov 27.
Molecular simulations leading to sensors for the detection of explosive compounds require force field parameters that can reproduce the mechanical and vibrational properties of energetic materials. We developed precise harmonic force fields for alanine polypeptides and glycine oligopeptides using the FUERZA procedure that uses the Hessian tensor (obtained from ab initio calculations) to calculate precise parameters. In this work, we used the same procedure to calculate generalized force field parameters of several nitro compounds. We found a linear relationship between force constant and bond distance. The average angle in the nitro compounds was 116°, excluding the 90° angle of the carbon atoms in the octanitrocubane. The calculated parameters permitted the accurate molecular modeling of nitro compounds containing many functional groups. Results were acceptable when compared with others obtained using methods that are specific for one type of molecule, and much better than others obtained using methods that are too general (these ignore the chemical effects of surrounding atoms on the bonding and therefore the bond strength, which affects the mechanical and vibrational properties of the whole molecule).
为了开发用于探测爆炸物的传感器,需要有能够重现含能材料力学和振动特性的力场参数。我们使用 FUERZA 程序,根据海森张量(由从头计算得到)来计算精确参数,为丙氨酸多肽和甘氨酸寡肽开发了精确的调和力场。在这项工作中,我们使用相同的程序计算了几种硝基化合物的广义力场参数。我们发现力常数和键距之间存在线性关系。硝基化合物中的平均角度为 116°,不包括八硝基立方烷中碳原子的 90°角。计算得到的参数可以精确地对含有许多官能团的硝基化合物进行分子建模。与其他特定于一种分子的方法得到的结果相比,这些结果是可以接受的,与使用过于通用的方法得到的结果相比,这些结果要好得多(这些方法忽略了相邻原子对键合和键强度的化学影响,从而影响整个分子的力学和振动特性)。