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使用经典力学的金属离子建模

Metal Ion Modeling Using Classical Mechanics.

作者信息

Li Pengfei, Merz Kenneth M

机构信息

Department of Chemistry, Department of Biochemistry and Molecular Biology, and Institute of Cyber-Enabled Research, Michigan State University , East  Lansing, Michigan 48824, United States.

出版信息

Chem Rev. 2017 Feb 8;117(3):1564-1686. doi: 10.1021/acs.chemrev.6b00440. Epub 2017 Jan 3.

Abstract

Metal ions play significant roles in numerous fields including chemistry, geochemistry, biochemistry, and materials science. With computational tools increasingly becoming important in chemical research, methods have emerged to effectively face the challenge of modeling metal ions in the gas, aqueous, and solid phases. Herein, we review both quantum and classical modeling strategies for metal ion-containing systems that have been developed over the past few decades. This Review focuses on classical metal ion modeling based on unpolarized models (including the nonbonded, bonded, cationic dummy atom, and combined models), polarizable models (e.g., the fluctuating charge, Drude oscillator, and the induced dipole models), the angular overlap model, and valence bond-based models. Quantum mechanical studies of metal ion-containing systems at the semiempirical, ab initio, and density functional levels of theory are reviewed as well with a particular focus on how these methods inform classical modeling efforts. Finally, conclusions and future prospects and directions are offered that will further enhance the classical modeling of metal ion-containing systems.

摘要

金属离子在包括化学、地球化学、生物化学和材料科学在内的众多领域中发挥着重要作用。随着计算工具在化学研究中日益重要,已经出现了一些方法来有效应对在气相、水相和固相模拟金属离子的挑战。在此,我们回顾了过去几十年来针对含金属离子体系开发的量子和经典模拟策略。本综述重点关注基于非极化模型(包括非键合、键合、阳离子虚拟原子和组合模型)、可极化模型(例如,波动电荷、德鲁德振子和诱导偶极子模型)、角重叠模型和基于价键的模型的经典金属离子模拟。还综述了在半经验、从头算和密度泛函理论水平上对含金属离子体系的量子力学研究,特别关注这些方法如何为经典模拟工作提供信息。最后,给出了结论以及未来的前景和方向 将进一步加强对含金属离子体系的经典模拟。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1ed6/5312828/a11845828a00/cr-2016-00440p_0001.jpg

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