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创造超越天然字母表的新型蛋白质序列。

Creating novel protein scripts beyond natural alphabets.

作者信息

Kumar Anil, Ramakrishnan Vibin

出版信息

Syst Synth Biol. 2010 Dec;4(4):247-56. doi: 10.1007/s11693-011-9068-5. Epub 2011 Mar 1.

Abstract

Natural proteins are concatenated amino acids with definite handedness or chirality, with their spatial orientation being preferentially left handed or L-chiral. This paper discusses the biophysics of stereo-chemical perturbation to proteins using D-(α) amino acid and its utility as an additional design alphabet while scripting novel protein structures.

摘要

天然蛋白质是由具有特定手性或旋光性的氨基酸连接而成,其空间取向优先为左旋或L-手性。本文讨论了使用D-(α)氨基酸对蛋白质进行立体化学扰动的生物物理学及其在构建新型蛋白质结构时作为额外设计字母表的用途。

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本文引用的文献

1
Zinc-finger hydrolase: Computational selection of a linker and a sequence towards metal activation with a synthetic αββ protein.
Bioorg Med Chem. 2010 Dec 1;18(23):8270-6. doi: 10.1016/j.bmc.2010.10.003. Epub 2010 Oct 27.
2
De novo design and molecular assembly of a transmembrane diporphyrin-binding protein complex.
J Am Chem Soc. 2010 Nov 10;132(44):15516-8. doi: 10.1021/ja107487b.
3
An exciting but challenging road ahead for computational enzyme design.
Protein Sci. 2010 Oct;19(10):1817-9. doi: 10.1002/pro.481.
4
Predicting protein structures with a multiplayer online game.
Nature. 2010 Aug 5;466(7307):756-60. doi: 10.1038/nature09304.
5
Homochiral stereochemistry: the missing link of structure to energetics in protein folding.
J Phys Chem B. 2009 Dec 24;113(51):16435-42. doi: 10.1021/jp906811k.
7
An efficient algorithm for multistate protein design based on FASTER.
J Comput Chem. 2010 Apr 15;31(5):904-16. doi: 10.1002/jcc.21375.
8
Chapter 13. Nonribosomal peptide synthetases mechanistic and structural aspects of essential domains.
Methods Enzymol. 2009;458:337-51. doi: 10.1016/S0076-6879(09)04813-7.
9
Protein design with L- and D-alpha-amino acid structures as the alphabet.
Acc Chem Res. 2008 Oct;41(10):1301-8. doi: 10.1021/ar700265t. Epub 2008 Jul 22.

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