RNA Biology Group and Institute for Cell and Molecular Biosciences, The Medical School, Newcastle University, Newcastle upon Tyne NE2 4HH, UK.
Nucleic Acids Res. 2012 Apr;40(7):3143-51. doi: 10.1093/nar/gkr1176. Epub 2011 Dec 2.
Expression of viral proteins frequently includes non-canonical decoding events ('recoding') during translation. '2A' oligopeptides drive one such event, termed 'stop-carry on' recoding. Nascent 2A peptides interact with the ribosomal exit tunnel to dictate an unusual stop codon-independent termination of translation at the final Pro codon of 2A. Subsequently, translation 'reinitiates' on the same codon, two individual proteins being generated from one open reading frame. Many 2A peptides have been identified, and they have a conserved C-terminal motif. Little similarity is present in the N-terminal portions of these peptides, which might suggest that these amino acids are not important in the 2A reaction. However, mutagenesis indicates that identity of the amino acid at nearly all positions of a single 2A peptide is important for activity. Each 2A may then represent a specific solution for positioning the conserved C-terminus within the peptidyl-transferase centre to promote recoding. Nascent 2A peptide:ribosome interactions are suggested to alter ribosomal fine structure to discriminate against prolyl-tRNA(Pro) and promote termination in the absence of a stop codon. Such structural modifications may account for our observation that replacement of the final Pro codon of 2A with any stop codon both stalls ribosome processivity and inhibits nascent chain release.
病毒蛋白的表达通常在翻译过程中包括非规范解码事件(“重编码”)。“2A”寡肽驱动这样的事件之一,称为“停止继续”重编码。新生的 2A 肽与核糖体出口隧道相互作用,决定在 2A 的最后一个脯氨酸密码子处终止翻译,而无需终止密码子。随后,翻译在同一密码子上“重新开始”,从一个开放阅读框产生两个独立的蛋白质。已经鉴定出许多 2A 肽,它们具有保守的 C 末端基序。这些肽的 N 末端部分几乎没有相似性,这可能表明这些氨基酸在 2A 反应中不重要。然而,诱变表明,单个 2A 肽的几乎所有位置的氨基酸的身份对于活性都是重要的。那么,每个 2A 可能代表了一种特定的解决方案,用于将保守的 C 末端定位在肽基转移酶中心内以促进重编码。新生的 2A 肽:核糖体相互作用被认为会改变核糖体的精细结构,以排斥脯氨酰-tRNA(Pro)并在没有终止密码子的情况下促进终止。这种结构修饰可能解释了我们的观察结果,即 2A 的最后一个脯氨酸密码子被任何终止密码子取代,都会使核糖体的连续性停滞并抑制新生链的释放。