氮单胞菌属 Y88(T)的基因组草图。
Draft genome sequence of Novosphingobium nitrogenifigens Y88(T).
机构信息
Scion, Rotorua, New Zealand.
出版信息
J Bacteriol. 2012 Jan;194(1):201. doi: 10.1128/JB.06381-11.
Abstract
Novosphingobium nitrogenifigens was originally isolated from pulp and paper mill wastewater, a low-nitrogen, high-carbon environment. N. nitrogenifigens is the first known nitrogen-fixing, polyhydroxyalkanoate-accumulating sphingomonad, and we report the annotated draft genome sequence of the type strain Y88(T) here.
摘要
最初从纸浆和造纸厂废水中分离到的新鞘氨醇单胞菌是一种低氮、高碳环境的细菌。新鞘氨醇单胞菌是已知的第一个固氮、聚羟基烷酸酯积累的鞘氨醇单胞菌，我们在此报道了其模式菌株 Y88(T)的注释草案基因组序列。
相似文献
1
Draft genome sequence of Novosphingobium nitrogenifigens Y88(T).氮单胞菌属 Y88(T)的基因组草图。
J Bacteriol. 2012 Jan;194(1):201. doi: 10.1128/JB.06381-11.
2
Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater.新鞘氨醇单胞菌新种氮营养新鞘氨醇单胞菌，一种从新西兰纸浆和造纸废水中分离出的可积累聚羟基脂肪酸酯的固氮菌。
Int J Syst Evol Microbiol. 2007 Nov;57(Pt 11):2467-2471. doi: 10.1099/ijs.0.64627-0.
3
Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.新型鞘氨醇单胞菌的蛋白质组表型分析揭示了其同时进行固氮、聚羟基烷酸酯生产以及抵抗活性氧物种的强大能力。
Appl Environ Microbiol. 2012 Jul;78(14):4802-15. doi: 10.1128/AEM.00274-12. Epub 2012 May 11.
4
Novosphingobium acidiphilum sp. nov., an acidophilic salt-sensitive bacterium isolated from the humic acid-rich Lake Grosse Fuchskuhle.嗜酸性新鞘氨醇菌，一种从富含有机酸的大富克斯库勒湖分离出的嗜酸且对盐敏感的细菌。
Int J Syst Evol Microbiol. 2009 Feb;59(Pt 2):323-30. doi: 10.1099/ijs.0.65852-0.
5
Novel nitrogen-fixing Acetobacter nitrogenifigens sp. nov., isolated from Kombucha tea.从康普茶中分离出的新型固氮氮源醋杆菌新种。
Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1899-1903. doi: 10.1099/ijs.0.64101-0.
6
Draft genome sequence of Parvularcula oceani JLT2013(T), a rhodopsin-containing bacterium isolated from deep-sea water of the Southeastern Pacific.
Mar Genomics. 2015 Dec;24 Pt 3:211-3. doi: 10.1016/j.margen.2015.05.013. Epub 2015 May 30.
7
Novosphingobium sediminis sp. nov., isolated from the sediment of a eutrophic lake.新鞘氨醇菌属新种——嗜泥新鞘氨醇菌，从富营养化湖泊的沉积物中分离得到。
J Gen Appl Microbiol. 2012;58(5):357-62. doi: 10.2323/jgam.58.357.
8
Composition of nifH in a wastewater treatment system reliant on N(2) fixation.依赖固氮作用的废水处理系统中 nifH 的组成
Appl Microbiol Biotechnol. 2008 Jul;79(5):811-8. doi: 10.1007/s00253-008-1486-2. Epub 2008 May 1.
9
Effects of substrate composition on the structure of microbial communities in wastewater using fluorescence in situ hybridisation.利用荧光原位杂交技术研究废水中微生物群落结构对基质组成的影响。
Syst Appl Microbiol. 2011 Jul;34(5):337-43. doi: 10.1016/j.syapm.2010.10.006. Epub 2011 Apr 19.
10
Complete genome sequence of Novosphingobium resinovorum SA1, a versatile xenobiotic-degrading bacterium capable of utilizing sulfanilic acid.树脂诺卡氏菌SA1的全基因组序列，SA1是一种能够利用磺胺酸的多功能异生素降解细菌。
J Biotechnol. 2017 Jan 10;241:76-80. doi: 10.1016/j.jbiotec.2016.11.013. Epub 2016 Nov 13.
引用本文的文献
1
Variation in resource competition traits among strains is affected by their microbiomes.菌株之间资源竞争性状的差异受其微生物群落的影响。
mLife. 2023 Dec 18;2(4):401-415. doi: 10.1002/mlf2.12094. eCollection 2023 Dec.
2
Polyhydroxyalkanoate Production by from Steroidal Endocrine Disruptors.甾体内分泌干扰物产生聚羟基脂肪酸酯
Microorganisms. 2022 Mar 24;10(4):706. doi: 10.3390/microorganisms10040706.
3
Comparative genomic analysis of six bacteria belonging to the genus Novosphingobium: insights into marine adaptation, cell-cell signaling and bioremediation.六种新鞘氨醇单胞菌属细菌的比较基因组分析：对海洋适应、细胞间信号传递和生物修复的深入了解。
BMC Genomics. 2013 Jun 28;14:431. doi: 10.1186/1471-2164-14-431.
4
Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.比较 26 个鞘氨醇单胞菌基因组揭示了多样化的环境适应和生物降解能力。
Appl Environ Microbiol. 2013 Jun;79(12):3724-33. doi: 10.1128/AEM.00518-13. Epub 2013 Apr 5.
5
Proteomic phenotyping of Novosphingobium nitrogenifigens reveals a robust capacity for simultaneous nitrogen fixation, polyhydroxyalkanoate production, and resistance to reactive oxygen species.新型鞘氨醇单胞菌的蛋白质组表型分析揭示了其同时进行固氮、聚羟基烷酸酯生产以及抵抗活性氧物种的强大能力。
Appl Environ Microbiol. 2012 Jul;78(14):4802-15. doi: 10.1128/AEM.00274-12. Epub 2012 May 11.
本文引用的文献
1
Sphingobium scionense sp. nov., an aromatic hydrocarbon-degrading bacterium isolated from contaminated sawmill soil.鞘氨醇单胞菌属 scionense 种，一种从受污染的锯木厂土壤中分离出的芳香烃降解细菌。
Int J Syst Evol Microbiol. 2010 Feb;60(Pt 2):413-416. doi: 10.1099/ijs.0.008144-0. Epub 2009 Aug 3.
2
Physico-chemical properties of polyhydroxyalkanoate produced by mixed-culture nitrogen-fixing bacteria.混合培养固氮细菌产生的聚羟基脂肪酸酯的物理化学性质
Appl Microbiol Biotechnol. 2009 Mar;82(3):545-55. doi: 10.1007/s00253-008-1836-0. Epub 2009 Jan 6.
3
Novosphingobium nitrogenifigens sp. nov., a polyhydroxyalkanoate-accumulating diazotroph isolated from a New Zealand pulp and paper wastewater.新鞘氨醇单胞菌新种氮营养新鞘氨醇单胞菌，一种从新西兰纸浆和造纸废水中分离出的可积累聚羟基脂肪酸酯的固氮菌。
Int J Syst Evol Microbiol. 2007 Nov;57(Pt 11):2467-2471. doi: 10.1099/ijs.0.64627-0.
4
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
5
Sphingopyxis chilensis sp. nov., a chlorophenol-degrading bacterium that accumulates polyhydroxyalkanoate, and transfer of Sphingomonas alaskensis to Sphingopyxis alaskensis comb. nov.新种智利鞘氨醇单胞菌，一种可降解氯酚并积累聚羟基脂肪酸酯的细菌，以及将阿拉斯加鞘氨醇单胞菌转移至鞘氨醇新鞘氨醇菌新组合。
Int J Syst Evol Microbiol. 2003 Mar;53(Pt 2):473-477. doi: 10.1099/ijs.0.02375-0.
6
Novosphingobium hassiacum sp. nov., a new species isolated from an aerated sewage pond.新鞘氨醇菌哈西阿库姆新种，一种从曝气污水塘分离出的新物种。
Syst Appl Microbiol. 2002 Apr;25(1):37-45. doi: 10.1078/0723-2020-00083.
7
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.tRNAscan-SE：用于改进基因组序列中转运RNA基因检测的程序。
Nucleic Acids Res. 1997 Mar 1;25(5):955-64. doi: 10.1093/nar/25.5.955.
8
Occurrence, metabolism, metabolic role, and industrial uses of bacterial polyhydroxyalkanoates.细菌聚羟基脂肪酸酯的产生、代谢、代谢作用及工业用途
Microbiol Rev. 1990 Dec;54(4):450-72. doi: 10.1128/mr.54.4.450-472.1990.
9
Metabolism of dibenzo-p-dioxin by Sphingomonas sp. strain RW1.鞘氨醇单胞菌属菌株RW1对二苯并-对-二恶英的代谢
Appl Environ Microbiol. 1992 Mar;58(3):1005-10. doi: 10.1128/aem.58.3.1005-1010.1992.
Zotero 插件