Sims Jennifer N, Isokpehi Raphael D, Cooper Gabrielle A, Bass Michael P, Brown Shyretha D, St John Alison L, Gulig Paul A, Cohly Hari H P
Center for Bioinformatics & Computational Biology, Jackson State University, Jackson, Mississippi, USA.
Environ Health Insights. 2011;5:71-85. doi: 10.4137/EHI.S7806. Epub 2011 Nov 10.
Foodborne illnesses caused by microbial and chemical contaminants in food are a substantial health burden worldwide. In 2007, human vibriosis (non-cholera Vibrio infections) became a notifiable disease in the United States. In addition, Vibrio species are among the 31 major known pathogens transmitted through food in the United States. Diverse surveillance systems for foodborne pathogens also track outbreaks, illnesses, hospitalization and deaths due to non-cholera vibrios. Considering the recognition of vibriosis as a notifiable disease in the United States and the availability of diverse surveillance systems, there is a need for the development of easily deployed visualization and analysis approaches that can combine diverse data sources in an interactive manner. Current efforts to address this need are still limited. Visual analytics is an iterative process conducted via visual interfaces that involves collecting information, data preprocessing, knowledge representation, interaction, and decision making. We have utilized public domain outbreak and surveillance data sources covering 1973 to 2010, as well as visual analytics software to demonstrate integrated and interactive visualizations of data on foodborne outbreaks and surveillance of Vibrio species. Through the data visualization, we were able to identify unique patterns and/or novel relationships within and across datasets regarding (i) causative agent; (ii) foodborne outbreaks and illness per state; (iii) location of infection; (iv) vehicle (food) of infection; (v) anatomical site of isolation of Vibrio species; (vi) patients and complications of vibriosis; (vii) incidence of laboratory-confirmed vibriosis and V. parahaemolyticus outbreaks. The additional use of emerging visual analytics approaches for interaction with data on vibriosis, including non-foodborne related disease, can guide disease control and prevention as well as ongoing outbreak investigations.
由食品中的微生物和化学污染物引起的食源性疾病是全球范围内一项重大的健康负担。2007年,人类弧菌病(非霍乱弧菌感染)在美国成为须上报的疾病。此外,弧菌属是美国已知的通过食物传播的31种主要病原体之一。针对食源性病原体的各种监测系统也在追踪由非霍乱弧菌引起的疫情、疾病、住院情况和死亡情况。鉴于弧菌病在美国被认定为须上报的疾病,且有各种监测系统可用,因此需要开发易于部署的可视化和分析方法,以便能够以交互方式整合各种数据源。目前为满足这一需求所做的努力仍然有限。可视化分析是一个通过可视化界面进行的迭代过程,包括收集信息、数据预处理、知识表示、交互和决策。我们利用了涵盖1973年至2010年的公共领域疫情和监测数据源,以及可视化分析软件,展示了关于食源性疫情和弧菌属监测数据的综合交互式可视化。通过数据可视化,我们能够识别数据集中以及不同数据集之间关于以下方面的独特模式和/或新关系:(i)病原体;(ii)每个州的食源性疫情和疾病;(iii)感染地点;(iv)感染媒介(食物);(v)弧菌属的分离解剖部位;(vi)弧菌病患者及并发症;(vii)实验室确诊的弧菌病和副溶血性弧菌疫情的发病率。将新兴的可视化分析方法额外用于与弧菌病数据(包括与非食源性相关疾病的数据)进行交互,可以指导疾病控制和预防以及正在进行的疫情调查。