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蛋白质中子晶体学结构中氢原子位置的快速可视化

Rapid visualization of hydrogen positions in protein neutron crystallographic structures.

作者信息

Munshi Parthapratim, Chung Shang-Lin, Blakeley Matthew P, Weiss Kevin L, Myles Dean A A, Meilleur Flora

机构信息

Neutron Sciences Directorate, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2012 Jan;68(Pt 1):35-41. doi: 10.1107/S0907444911048402. Epub 2011 Dec 9.

Abstract

Neutron crystallography is a powerful technique for experimental visualization of the positions of light atoms, including hydrogen and its isotope deuterium. In recent years, structural biologists have shown increasing interest in the technique as it uniquely complements X-ray crystallographic data by revealing the positions of D atoms in macromolecules. With this regained interest, access to macromolecular neutron crystallography beamlines is becoming a limiting step. In this report, it is shown that a rapid data-collection strategy can be a valuable alternative to longer data-collection times in appropriate cases. Comparison of perdeuterated rubredoxin structures refined against neutron data sets collected over hours and up to 5 d shows that rapid neutron data collection in just 14 h is sufficient to provide the positions of 269 D atoms without ambiguity.

摘要

中子晶体学是一种用于实验可视化轻原子(包括氢及其同位素氘)位置的强大技术。近年来,结构生物学家对该技术表现出越来越浓厚的兴趣,因为它通过揭示大分子中氘原子的位置,独特地补充了X射线晶体学数据。随着这种兴趣的重新燃起,使用大分子中子晶体学光束线成为一个限制步骤。在本报告中,结果表明,在适当情况下,快速数据收集策略可以成为较长数据收集时间的一个有价值的替代方案。对根据数小时至长达5天收集的中子数据集精修的全氘代红氧还蛋白结构进行比较表明,仅在14小时内进行快速中子数据收集就足以明确提供269个氘原子的位置。

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