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脊椎动物中枢神经系统的进化伴随着重复基因的新的表达变化。

Evolution of vertebrate central nervous system is accompanied by novel expression changes of duplicate genes.

机构信息

State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Jiaochang East Road 32, Kunming 650223, China.

出版信息

J Genet Genomics. 2011 Dec 20;38(12):577-84. doi: 10.1016/j.jgg.2011.10.004. Epub 2011 Dec 3.

DOI:10.1016/j.jgg.2011.10.004
PMID:22196400
Abstract

The evolution of the central nervous system (CNS) is one of the most striking changes during the transition from invertebrates to vertebrates. As a major source of genetic novelties, gene duplication might play an important role in the functional innovation of vertebrate CNS. In this study, we focused on a group of CNS-biased genes that duplicated during early vertebrate evolution. We investigated the tempo-spatial expression patterns of 33 duplicate gene families and their orthologs during the embryonic development of the vertebrate Xenopus laevis and the cephalochordate Brachiostoma belcheri. Almost all the identified duplicate genes are differentially expressed in the CNS in Xenopus embryos, and more than 50% and 30% duplicate genes are expressed in the telencephalon and mid-hindbrain boundary, respectively, which are mostly considered as two innovations in the vertebrate CNS. Interestingly, more than 50% of the amphioxus orthologs do not show apparent expression in the CNS in amphioxus embryos as detected by in situ hybridization, indicating that some of the vertebrate CNS-biased duplicate genes might arise from non-CNS genes in invertebrates. Our data accentuate the functional contribution of gene duplication in the CNS evolution of vertebrate and uncover an invertebrate non-CNS history for some vertebrate CNS-biased duplicate genes.

摘要

中枢神经系统(CNS)的进化是从无脊椎动物到脊椎动物过渡过程中最显著的变化之一。作为遗传新特性的主要来源,基因复制可能在脊椎动物 CNS 的功能创新中发挥重要作用。在这项研究中,我们专注于一组在早期脊椎动物进化过程中复制的偏向 CNS 的基因。我们研究了 33 个复制基因家族及其脊椎动物非洲爪蟾和头索动物文昌鱼胚胎发育过程中的时空表达模式。在非洲爪蟾胚胎中,几乎所有鉴定出的复制基因都在 CNS 中呈现差异表达,超过 50%和 30%的复制基因分别在端脑和中后脑边界表达,这两个区域被认为是脊椎动物 CNS 的两个创新区域。有趣的是,通过原位杂交检测,文昌鱼胚胎中的大部分同源基因在 CNS 中没有明显表达,这表明一些偏向 CNS 的脊椎动物复制基因可能来源于无脊椎动物的非 CNS 基因。我们的数据强调了基因复制在脊椎动物 CNS 进化中的功能贡献,并揭示了一些偏向 CNS 的脊椎动物复制基因在无脊椎动物 CNS 中的历史。

相似文献

1
Evolution of vertebrate central nervous system is accompanied by novel expression changes of duplicate genes.脊椎动物中枢神经系统的进化伴随着重复基因的新的表达变化。
J Genet Genomics. 2011 Dec 20;38(12):577-84. doi: 10.1016/j.jgg.2011.10.004. Epub 2011 Dec 3.
2
A Gbx homeobox gene in amphioxus: insights into ancestry of the ANTP class and evolution of the midbrain/hindbrain boundary.文昌鱼中的一个Gbx同源框基因:对ANTP类起源及中脑/后脑边界进化的见解。
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Phylogenetic analyses alone are insufficient to determine whether genome duplication(s) occurred during early vertebrate evolution.仅靠系统发育分析不足以确定在早期脊椎动物进化过程中是否发生了基因组复制。
J Exp Zool B Mol Dev Evol. 2003 Oct 15;299(1):41-53. doi: 10.1002/jez.b.40.
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Gene duplication, co-option and recruitment during the origin of the vertebrate brain from the invertebrate chordate brain.脊椎动物大脑从无脊椎脊索动物大脑起源过程中的基因复制、功能改变和基因招募。
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Expression of sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development.斑马鱼中sox11基因重复体的表达表明在发育过程中祖先基因表达模式的相互丧失。
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The amphioxus Hairy family: differential fate after duplication.文昌鱼Hairy家族:复制后的不同命运。
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Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates.神经系统基因编码序列的选择性限制是脊椎动物中重复基因保留的主要决定因素。
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Evolutionary conservation of the presumptive neural plate markers AmphiSox1/2/3 and AmphiNeurogenin in the invertebrate chordate amphioxus.无脊椎脊索动物文昌鱼中假定神经板标记物AmphiSox1/2/3和AmphiNeurogenin的进化保守性。
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Gene duplications and the origins of vertebrate development.基因复制与脊椎动物发育的起源
Dev Suppl. 1994:125-33.

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BMC Ecol Evol. 2021 Apr 21;21(1):59. doi: 10.1186/s12862-021-01794-w.
2
Selective Constraints on Coding Sequences of Nervous System Genes Are a Major Determinant of Duplicate Gene Retention in Vertebrates.神经系统基因编码序列的选择性限制是脊椎动物中重复基因保留的主要决定因素。
Mol Biol Evol. 2017 Nov 1;34(11):2773-2791. doi: 10.1093/molbev/msx199.
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The evolution of duplicate gene expression in mammalian organs.
哺乳动物器官中重复基因表达的进化。
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Genome-wide survey and expression analysis of the bHLH-PAS genes in the amphioxus Branchiostoma floridae reveal both conserved and diverged expression patterns between cephalochordates and vertebrates.佛罗里达文昌鱼中bHLH-PAS基因的全基因组调查与表达分析揭示了头索动物和脊椎动物之间保守和分化的表达模式。
Evodevo. 2014 Jun 3;5:20. doi: 10.1186/2041-9139-5-20. eCollection 2014.
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Nucleic Acids Res. 2012 Sep;40(16):7597-605. doi: 10.1093/nar/gks464. Epub 2012 May 29.