Suppr超能文献

染色体传递保真度基因的可变性和突变谱

Mutability and mutational spectrum of chromosome transmission fidelity genes.

作者信息

Stirling Peter C, Crisp Matthew J, Basrai Munira A, Tucker Cheryl M, Dunham Maitreya J, Spencer Forrest A, Hieter Philip

机构信息

Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada, V6T1Z4.

出版信息

Chromosoma. 2012 Jun;121(3):263-75. doi: 10.1007/s00412-011-0356-3. Epub 2011 Dec 24.

Abstract

It has been more than two decades since the original chromosome transmission fidelity (Ctf) screen of Saccharomyces cerevisiae was published. Since that time the spectrum of mutations known to cause Ctf and, more generally, chromosome instability (CIN) has expanded dramatically as a result of systematic screens across yeast mutant arrays. Here we describe a comprehensive summary of the original Ctf genetic screen and the cloning of the remaining complementation groups as efforts to expand our knowledge of the CIN gene repertoire and its mutability in a model eukaryote. At the time of the original screen, it was impossible to predict either the genes and processes that would be overrepresented in a pool of random mutants displaying a Ctf phenotype or what the entire set of genes potentially mutable to Ctf would be. We show that in a collection of 136 randomly selected Ctf mutants, >65% of mutants map to 13 genes, 12 of which are involved in sister chromatid cohesion and/or kinetochore function. Extensive screening of systematic mutant collections has shown that ~350 genes with functions as diverse as RNA processing and proteasomal activity mutate to cause a Ctf phenotype and at least 692 genes are required for faithful chromosome segregation. The enrichment of random Ctf alleles in only 13 of ~350 possible Ctf genes suggests that these genes are more easily mutable to cause genome instability than the others. These observations inform our understanding of recurring CIN mutations in human cancers where presumably random mutations are responsible for initiating the frequently observed CIN phenotype of tumors.

摘要

自酿酒酵母最初的染色体传递保真度(Ctf)筛选发表以来,已经过去了二十多年。从那时起,由于对酵母突变体阵列进行了系统筛选,已知会导致Ctf以及更普遍的染色体不稳定性(CIN)的突变谱已大幅扩展。在这里,我们描述了原始Ctf基因筛选的全面总结以及其余互补组的克隆,这些都是为了扩展我们对CIN基因库及其在模式真核生物中的可变性的认识。在进行原始筛选时,无法预测在显示Ctf表型的随机突变体库中哪些基因和过程会过度富集,也无法预测可能突变为Ctf的所有基因。我们发现,在136个随机选择的Ctf突变体中,超过65%的突变体定位于13个基因,其中12个基因参与姐妹染色单体黏连和/或动粒功能。对系统突变体库的广泛筛选表明,约350个功能多样的基因,如RNA加工和蛋白酶体活性相关基因,突变为会导致Ctf表型,并且至少692个基因是忠实染色体分离所必需的。在约350个可能的Ctf基因中,只有13个基因富集了随机的Ctf等位基因,这表明这些基因比其他基因更容易发生突变从而导致基因组不稳定。这些观察结果有助于我们理解人类癌症中反复出现的CIN突变,在这些癌症中,可能是随机突变引发了肿瘤中频繁观察到的CIN表型。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8c97/3350768/670d60e4f3bb/412_2011_356_Fig1_HTML.jpg

相似文献

1
Mutability and mutational spectrum of chromosome transmission fidelity genes.
Chromosoma. 2012 Jun;121(3):263-75. doi: 10.1007/s00412-011-0356-3. Epub 2011 Dec 24.
2
Systematic yeast synthetic lethal and synthetic dosage lethal screens identify genes required for chromosome segregation.
Proc Natl Acad Sci U S A. 2005 Sep 27;102(39):13956-61. doi: 10.1073/pnas.0503504102. Epub 2005 Sep 19.
4
Novel role for a Saccharomyces cerevisiae nucleoporin, Nup170p, in chromosome segregation.
Genetics. 2001 Apr;157(4):1543-53. doi: 10.1093/genetics/157.4.1543.
7
Functional roles for evolutionarily conserved Spt4p at centromeres and heterochromatin in Saccharomyces cerevisiae.
EMBO J. 2004 Apr 21;23(8):1804-14. doi: 10.1038/sj.emboj.7600161. Epub 2004 Apr 1.
8
Misregulation of Scm3p/HJURP causes chromosome instability in Saccharomyces cerevisiae and human cells.
PLoS Genet. 2011 Sep;7(9):e1002303. doi: 10.1371/journal.pgen.1002303. Epub 2011 Sep 29.

引用本文的文献

2
Reduced sister chromatid cohesion acts as a tumor penetrance modifier.
PLoS Genet. 2022 Aug 22;18(8):e1010341. doi: 10.1371/journal.pgen.1010341. eCollection 2022 Aug.
4
A Double-Edged Sword: Aneuploidy is a Prevalent Strategy in Fungal Adaptation.
Genes (Basel). 2019 Oct 10;10(10):787. doi: 10.3390/genes10100787.
5
A novel assay to screen siRNA libraries identifies protein kinases required for chromosome transmission.
Genome Res. 2019 Oct;29(10):1719-1732. doi: 10.1101/gr.254276.119. Epub 2019 Sep 12.
6
Exonuclease domain mutants of yeast DIS3 display genome instability.
Nucleus. 2019 Dec;10(1):21-32. doi: 10.1080/19491034.2019.1578600.
8
Dosage Mutator Genes in Saccharomyces cerevisiae: A Novel Mutator Mode-of-Action of the Mph1 DNA Helicase.
Genetics. 2016 Nov;204(3):975-986. doi: 10.1534/genetics.116.192211. Epub 2016 Aug 31.
9
Overexpression screens identify conserved dosage chromosome instability genes in yeast and human cancer.
Proc Natl Acad Sci U S A. 2016 Sep 6;113(36):9967-76. doi: 10.1073/pnas.1611839113. Epub 2016 Aug 22.
10
Genetic instability in budding and fission yeast-sources and mechanisms.
FEMS Microbiol Rev. 2015 Nov;39(6):917-67. doi: 10.1093/femsre/fuv028. Epub 2015 Jun 24.

本文引用的文献

1
Mutational inactivation of STAG2 causes aneuploidy in human cancer.
Science. 2011 Aug 19;333(6045):1039-43. doi: 10.1126/science.1203619.
2
Aneuploidy drives genomic instability in yeast.
Science. 2011 Aug 19;333(6045):1026-30. doi: 10.1126/science.1206412.
3
Variation in genome-wide mutation rates within and between human families.
Nat Genet. 2011 Jun 12;43(7):712-4. doi: 10.1038/ng.862.
4
Human cancers express mutator phenotypes: origin, consequences and targeting.
Nat Rev Cancer. 2011 Jun;11(6):450-7. doi: 10.1038/nrc3063. Epub 2011 May 19.
6
Systematic exploration of essential yeast gene function with temperature-sensitive mutants.
Nat Biotechnol. 2011 Apr;29(4):361-7. doi: 10.1038/nbt.1832. Epub 2011 Mar 27.
7
Can corruption of chromosome cohesion create a conduit to cancer?
Nat Rev Cancer. 2011 Mar;11(3):199-210. doi: 10.1038/nrc3018. Epub 2011 Feb 17.
8
DNA polymerases and cancer.
Nat Rev Cancer. 2011 Feb;11(2):96-110. doi: 10.1038/nrc2998.
9
Searching for synthetic lethality in cancer.
Curr Opin Genet Dev. 2011 Feb;21(1):34-41. doi: 10.1016/j.gde.2010.10.009. Epub 2011 Jan 20.
10
Yeast Sen1 helicase protects the genome from transcription-associated instability.
Mol Cell. 2011 Jan 7;41(1):21-32. doi: 10.1016/j.molcel.2010.12.007.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验