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全基因组连锁扫描寻找跟脚跟骨超声测量的正常变化有关的数量性状基因座。

Genome-wide linkage scan for quantitative trait loci underlying normal variation in heel bone ultrasound measures.

机构信息

Lifespan Health Research Center, Wright State University, Boonshoft School of Medicine, Dayton, OH 45420, USA.

出版信息

J Nutr Health Aging. 2012 Jan;16(1):8-13. doi: 10.1007/s12603-011-0080-y.

Abstract

Quantitative ultrasound (QUS) traits are correlated with bone mineral density (BMD), but predict risk for future fracture independent of BMD. Only a few studies, however, have sought to identify specific genes influencing calcaneal QUS measures. The aim of this study was to conduct a genome-wide linkage scan to identify quantitative trait loci (QTL) influencing normal variation in QUS traits. QUS measures were collected from a total of 719 individuals (336 males and 383 females) from the Fels Longitudinal Study who have been genotyped and have at least one set of QUS measurements. Participants ranged in age from 18.0 to 96.6 years and were distributed across 110 nuclear and extended families. Using the Sahara ® bone sonometer, broadband ultrasound attenuation (BUA), speed of sound (SOS) and stiffness index (QUI) were collected from the right heel. Variance components based linkage analysis was performed on the three traits using 400 polymorphic short tandem repeat (STR) markers spaced approximately 10 cM apart across the autosomes to identify QTL influencing the QUS traits. Age, sex, and other significant covariates were simultaneously adjusted. Heritability estimates (h²) for the QUS traits ranged from 0.42 to 0.57. Significant evidence for a QTL influencing BUA was found on chromosome 11p15 near marker D11S902 (LOD = 3.11). Our results provide additional evidence for a QTL on chromosome 11p that harbors a potential candidate gene(s) related to BUA and bone metabolism.

摘要

定量超声(QUS)特征与骨密度(BMD)相关,但可独立于 BMD 预测未来骨折的风险。然而,只有少数研究试图确定影响跟骨 QUS 测量的特定基因。本研究旨在进行全基因组连锁扫描,以确定影响 QUS 特征正常变异的数量性状基因座(QTL)。从 Fels 纵向研究中总共采集了 719 名个体(336 名男性和 383 名女性)的 QUS 测量值,这些个体已进行基因分型,并且至少有一组 QUS 测量值。参与者的年龄范围为 18.0 至 96.6 岁,分布在 110 个核和扩展家族中。使用 Sahara ®骨超声仪,从右脚采集宽带超声衰减(BUA)、声速(SOS)和刚度指数(QUI)。使用大约 10 cM 间隔分布在常染色体上的 400 个多态短串联重复(STR)标记,对三个特征进行基于方差分量的连锁分析,以确定影响 QUS 特征的 QTL。同时调整年龄、性别和其他重要协变量。QUS 特征的遗传力估计值(h²)范围为 0.42 至 0.57。在染色体 11p15 附近标记 D11S902 处发现了影响 BUA 的 QTL 的显著证据(LOD = 3.11)。我们的结果提供了额外的证据,表明 11p 染色体上存在一个 QTL,可能包含与 BUA 和骨代谢相关的潜在候选基因。

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