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一种从含膜样品中获得的圆二色光谱的简单校正方法。

A simple method for correction of circular dichroism spectra obtained from membrane-containing samples.

机构信息

Department of Biochemistry and Biophysics and Program in Molecular and Cellular Biophysics, University of North Carolina, Chapel Hill, North Carolina 27599-7260, United States.

出版信息

Biochemistry. 2012 Feb 7;51(5):1005-8. doi: 10.1021/bi300025c. Epub 2012 Jan 27.

Abstract

Circular dichroism (CD) spectroscopy is an important technique in structural biology for examining folding and conformational changes of proteins in solution. However, the use of CD spectroscopy in a membrane medium (and also in a nonhomogeneous medium) is limited by (i) high light scattering and (ii) differential scattering of incident left and right circularly polarized light, especially at shorter wavelengths (<200 nm). We report a novel methodology for estimating the distortion of CD spectra caused by light scattering for membrane-bound peptides and proteins. The method is applied to three proteins with very different secondary structures to illustrate the limits of its capabilities when calibrated with a simple soluble peptide ([Ac]ANLKALEAQKQKEQRQAAEELANAK[OH], standard peptide) with a balanced secondary structure. The method with this calibration standard was quite successful in estimating α-helix but more limited when it comes to proteins with very high β-sheet or β-turn content.

摘要

圆二色性(CD)光谱学是结构生物学中的一项重要技术,用于研究溶液中蛋白质的折叠和构象变化。然而,在膜介质(以及非均相介质)中使用 CD 光谱学受到以下因素的限制:(i)高光散射和(ii)入射左旋和右旋圆偏振光的差异散射,尤其是在较短波长(<200nm)下。我们报告了一种用于估计膜结合肽和蛋白质中光散射引起的 CD 光谱扭曲的新方法。该方法应用于具有非常不同二级结构的三种蛋白质,以说明在使用具有平衡二级结构的简单可溶性肽([Ac]ANLKALEAQKQKEQRQAAEELANAK[OH],标准肽)进行校准的情况下,其能力的局限性。该方法与这种校准标准在估计α-螺旋方面非常成功,但在涉及具有非常高的β-折叠或β-转角含量的蛋白质时则受到限制。

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本文引用的文献

2
DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data.
Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W668-73. doi: 10.1093/nar/gkh371.
3
Analyses of circular dichroism spectra of membrane proteins.
Protein Sci. 2003 Apr;12(4):875-84. doi: 10.1110/ps.0229603.
4
Circular differential scattering can be an important part of the circular dichroism of macromolecules.
Proc Natl Acad Sci U S A. 1983 Jun;80(12):3568-72. doi: 10.1073/pnas.80.12.3568.
5
Experimental differential light-scattering correction to the circular dichroism of bacteriophage T2.
Proc Natl Acad Sci U S A. 1973 Jan;70(1):255-9. doi: 10.1073/pnas.70.1.255.
7
Spontaneous fusion of phosphatidylcholine small unilamellar vesicles in the fluid phase.
Biochemistry. 1987 Aug 25;26(17):5389-97. doi: 10.1021/bi00391a026.

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