Southern Regional Research Center, U.S. Department of Agriculture, 1100 Robert E. Lee Blvd, New Orleans, LA 70124, USA.
Carbohydr Res. 2012 Mar 1;350:68-76. doi: 10.1016/j.carres.2011.12.023. Epub 2012 Jan 3.
Adiabatic Φ/ψ maps for cellobiose were prepared with B3LYP density functional theory. A mixed basis set was used for minimization, followed with 6-31+G(d) single-point calculations, with and without SMD continuum solvation. Different arrangements of the exocyclic groups (38 starting geometries) were considered for each Φ/ψ point. The vacuum calculations agreed with earlier computational and experimental results on the preferred gas phase conformation (anti-Φ(H), syn-ψ(H)), and the results from the solvated calculations were consistent with the (syn Φ(H)/ψ(H) conformations from condensed phases (crystals or solutions). Results from related studies were compared, and there is substantial dependence on the solvation model as well as arrangements of exocyclic groups. New stabilizing interactions were revealed by Atoms-In-Molecules theory.
采用 B3LYP 密度泛函理论制备了纤维二糖的绝热 Φ/ψ 映射。使用混合基组进行最小化,然后进行 6-31+G(d)单点计算,同时考虑有无 SMD 连续溶剂化。对于每个 Φ/ψ 点,都考虑了环外基团的不同排列(38 个起始构象)。真空计算与先前关于气相优势构象(反式-Φ(H),顺式-ψ(H))的计算和实验结果一致,溶剂化计算的结果与凝聚相(晶体或溶液)的(顺式 Φ(H)/ψ(H)构象一致。比较了来自相关研究的结果,发现溶剂化模型以及环外基团的排列有很大的依赖性。分子中的原子理论揭示了新的稳定相互作用。