Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche, Segrate (MI), Italy.
Proteins. 2012 Apr;80(4):1154-66. doi: 10.1002/prot.24016. Epub 2012 Jan 24.
Tubulin dimers of psychrophilic eukaryotes can polymerize into microtubules at 4°C, a temperature at which microtubules from mesophiles disassemble. This unique capability requires changes in the primary structure and/or in post-translational modifications of the tubulin subunits. To contribute to the understanding of mechanisms responsible for microtubule cold stability, here we present a computational structural analysis based on molecular dynamics (MD) and experimental data of three β-tubulin isotypes, named EFBT2, EFBT3, and EFBT4, from the Antarctic protozoon Euplotes focardii that optimal temperature for growth and reproduction is 4°C. In comparison to the β-tubulin from E. crassus, a mesophilic Euplotes species, EFBT2, EFBT3, and EFBT4 possess unique amino acid substitutions that confer different flexible properties of the polypeptide, as well as an increased hydrophobicity of the regions involved in microtubule interdimeric contacts that may overcome the microtubule destabilizing effect of cold temperatures. The structural analysis based on MD indicated that all isotypes display different flexibility properties in the regions involved in the formation of longitudinal and lateral contacts during microtubule polymerization. We also investigated the role of E. focardii β-tubulin isotypes during the process of cilia formation. The unique characteristics of the primary and tertiary structures of psychrophilic β-tubulin isotypes seem responsible for the formation of microtubules with distinct dynamic and functional properties.
嗜冷真核生物的微管蛋白二聚体可以在 4°C 下聚合形成微管,而中温生物的微管在此温度下会解聚。这种独特的能力需要微管蛋白亚基的一级结构和/或翻译后修饰的改变。为了深入了解微管冷稳定性的机制,我们基于分子动力学(MD)和来自南极原生动物真涡虫的三种β-微管蛋白同工型 EFBT2、EFBT3 和 EFBT4 的实验数据进行了计算结构分析,该原生动物的最适生长和繁殖温度为 4°C。与中温真涡虫的β-微管蛋白(Euplotes crassus)相比,EFBT2、EFBT3 和 EFBT4 具有独特的氨基酸取代,赋予多肽不同的柔性特性,以及涉及微管二聚体相互作用的区域的疏水性增加,这可能克服了低温对微管的不稳定性影响。基于 MD 的结构分析表明,所有同工型在微管聚合过程中形成纵向和横向接触的区域都表现出不同的柔性特性。我们还研究了真涡虫β-微管蛋白同工型在纤毛形成过程中的作用。嗜冷β-微管蛋白同工型的一级和三级结构的独特特征似乎负责形成具有独特动态和功能特性的微管。