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从嗜冷真涡虫(Euplotes focardii)中鉴定的第一个真核冷适应类脂酶:通过与中温真涡虫(Euplotes crassus)的同源蛋白比较,鉴定出潜在的热适应决定因素。

Characterization of the first eukaryotic cold-adapted patatin-like phospholipase from the psychrophilic Euplotes focardii: Identification of putative determinants of thermal-adaptation by comparison with the homologous protein from the mesophilic Euplotes crassus.

机构信息

School of Biosciences and Biotechnology, University of Camerino, Italy.

出版信息

Biochimie. 2013 Sep;95(9):1795-806. doi: 10.1016/j.biochi.2013.06.008. Epub 2013 Jun 22.

Abstract

The ciliated protozoon Euplotes focardii, originally isolated from the coastal seawaters of Terra Nova Bay in Antarctica, shows a strictly psychrophilic phenotype, including optimal survival and multiplication rates at 4-5 °C. This characteristic makes E. focardii an ideal model species for identifying the molecular bases of cold adaptation in psychrophilic organisms, as well as a suitable source of novel cold-active enzymes for industrial applications. In the current study, we characterized the patatin-like phospholipase from E. focardii (EfPLP), and its enzymatic activity was compared to that of the homologous protein from the mesophilic congeneric species Euplotes crassus (EcPLP). Both EfPLP and EcPLP have consensus motifs conserved in other patatin-like phospholipases. By analyzing both esterase and phospholipase A2 activity, we determined the thermostability and the optimal pH, temperature dependence and substrates of these enzymes. We demonstrated that EfPLP shows the characteristics of a psychrophilic phospholipase. Furthermore, we analyzed the enzymatic activity of three engineered versions of the EfPLP, in which unique residues of EfPLP, Gly80, Ala201 and Val204, were substituted through site-directed mutagenesis with residues found in the E. crassus homolog (Glu, Pro and Ile, respectively). Additionally, three corresponding mutants of EcPLP were also generated and characterized. These analyses showed that the substitution of amino acids with rigid and bulky charged/hydrophobic side chain in the psychrophilic EfPLP confers enzymatic properties similar to those of the mesophilic patatin-like phospholipase, and vice versa. This is the first report on the isolation and characterization of a cold-adapted patatin-like phospholipase from eukaryotes. The results reported in this paper support the idea that enzyme thermal-adaptation is based mainly on some amino acid residues that influence the structural flexibility of polypeptides and that EfPLP is an attractive biocatalyst for industrial processes at low temperatures.

摘要

纤毛原生动物小膜壳虫最初从南极洲特罗诺瓦湾的沿海水域中分离出来,表现出严格的嗜冷表型,包括在 4-5°C 时最佳的生存和繁殖率。这一特性使 E. focardii 成为鉴定嗜冷生物中冷适应分子基础的理想模式生物,也是用于工业应用的新型冷活性酶的合适来源。在本研究中,我们对来自小膜壳虫的类脂酶(EfPLP)进行了特征描述,并比较了其与嗜温同属物种小膜壳虫(EcPLP)的同源蛋白的酶活性。EfPLP 和 EcPLP 都具有其他类脂酶中保守的共识基序。通过分析酯酶和磷脂酶 A2 的活性,我们确定了这些酶的热稳定性以及最佳 pH 值、温度依赖性和底物。我们证明了 EfPLP 表现出嗜冷磷脂酶的特征。此外,我们分析了 EfPLP 的三个工程化版本的酶活性,其中通过定点突变用 EcPLP 中的同源残基(Glu、Pro 和 Ile)取代 EfPLP 中的独特残基 Gly80、Ala201 和 Val204。此外,还生成并表征了三个相应的 EcPLP 突变体。这些分析表明,在嗜冷 EfPLP 中用刚性和大体积带电荷/疏水性侧链取代氨基酸赋予了与嗜温类脂酶类似的酶学特性,反之亦然。这是首次从真核生物中分离和表征冷适应的类脂酶。本文报道的结果支持这样一种观点,即酶的热适应性主要基于一些影响多肽结构灵活性的氨基酸残基,并且 EfPLP 是低温工业过程中具有吸引力的生物催化剂。

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