Theoretical Sciences Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Jakkur Campus, Bangalore 560 064, India.
J Chem Phys. 2012 Jan 28;136(4):044512. doi: 10.1063/1.3677187.
Using the Jagla model potential we calculate the potential of mean force (PMF) between hard sphere solutes immersed in a liquid displaying water-like properties. Consistent estimates of the PMF are obtained by (a) umbrella sampling, (b) calculating the work done by the mean force acting on the hard spheres as a function of their separation, and (c) determining the position dependent chemical potential after calculating the void space in the liquid. We calculate the PMF for an isobar along which cold denaturation of a model protein has previously been reported. We find that the PMF at contact varies non-monotonically, which is consistent with the observed cold denaturation. The Henry constant also varies non-monotonically with temperature. We find, on the other hand, that a second (solvent separated) minimum of the PMF becomes deeper as temperature decreases. We calculate the solvent-solvent pair correlation functions for solvents near the solute and in the bulk, and show that, as temperature decreases, the two pair correlation functions become indistinguishable, suggesting that the perturbation of solvent structure by the solute diminishes as temperature decreases. The solvent-solute pair correlation function at contact grows as the temperature decreases. We calculate the cavity correlation function and show the development of a solvent-separated peak upon decrease of temperature. These observations together suggest that cold denaturation occurs when the solvent penetrates between hydrophobic solutes in configurations with favorable free energy. Our results thus suggest that cold denatured proteins are structured and that cold denaturation arises from strong solvent-solute interactions, rather than from entropic considerations as in heat denaturation.
我们使用 Jagla 模型势来计算沉浸在具有类似水性质的液体中的硬球溶质之间的平均力势(PMF)。通过(a)伞状采样,(b)计算平均力对硬球的功作为它们分离的函数,以及(c)在计算液体中空隙空间后确定位置相关的化学势,我们获得了一致的 PMF 估计值。我们沿着先前报道过模型蛋白质冷变性的等压计算了 PMF。我们发现接触处的 PMF 呈非单调变化,这与观察到的冷变性一致。亨利常数也随温度呈非单调变化。另一方面,我们发现 PMF 的第二个(溶剂分离)最小值随着温度的降低而变得更深。我们计算了溶质附近和体相溶剂的溶剂-溶剂对相关函数,并表明随着温度的降低,两个对相关函数变得难以区分,这表明溶剂结构受溶质的扰动随着温度的降低而减小。接触处的溶剂-溶质对相关函数随着温度的降低而增大。我们计算了空腔相关函数,并显示出温度降低时溶剂分离峰的发展。这些观察结果表明,当溶剂以有利的自由能构型渗透到疏水分子之间时,冷变性就会发生。因此,我们的结果表明冷变性蛋白质具有结构,并且冷变性是由强溶剂-溶质相互作用引起的,而不是像热变性那样由熵考虑引起的。