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从蛋白质的冷变性角度研究疏水性的物理起源:水和简单流体的比较。

Physical origin of hydrophobicity studied in terms of cold denaturation of proteins: comparison between water and simple fluids.

机构信息

Institute of Advanced Energy, Kyoto University, Gokasho, Uji, Kyoto, Japan.

出版信息

Phys Chem Chem Phys. 2012 Nov 14;14(42):14554-66. doi: 10.1039/c2cp41738c. Epub 2012 Sep 26.

Abstract

A clue to the physical origin of the hydrophobicity is in the experimental observations, which show that it is weakened at low temperatures. By considering a solvophobic model protein immersed in water and three species of simple solvents, we analyze the temperature dependence of the changes in free energy, energy, and entropy of the solvent upon protein unfolding. The angle-dependent and radial-symmetric integral equation theories and the morphometric approach are employed in the analysis. Each of the changes is decomposed into two terms, which depend on the excluded volume and on the area and curvature of the solvent-accessible surface, respectively. The excluded-volume term of the entropy change is further decomposed into two components representing the protein-solvent pair correlation and the protein-solvent-solvent triplet and higher-order correlation, respectively. We show that water crowding in the system becomes more serious upon protein unfolding but this effect becomes weaker as the temperature is lowered. If the hydrophobicity originated from the water structuring near a nonpolar solute, it would be strengthened upon lowering of the temperature. Among the three species of simple solvents, considerable weakening of the solvophobicity at low temperatures is observed only for the solvent where the particles interact through a strong attractive potential and the particle size is as small as that of water. Even in the case of this solvent, however, cold denaturation of a protein cannot be reproduced. It would be reproducible if the attractive potential was substantially enhanced, but such enhancement causes the appearance of the metastability limit for a single liquid phase.

摘要

疏水性的物理起源的一个线索存在于实验观察中,这些观察表明,它在低温下会减弱。通过考虑一种疏水性模型蛋白在水中和三种简单溶剂中的状态,我们分析了自由能、能量和溶剂熵随蛋白展开的温度依赖性变化。分析中采用了角相关和径向对称积分方程理论和形态计量学方法。每种变化都可以分解为两个项,分别取决于排除体积和溶剂可及表面积的面积和曲率。熵变的排除体积项进一步分解为两个分量,分别代表蛋白-溶剂对相关和蛋白-溶剂-溶剂三重和更高阶相关。我们表明,随着蛋白展开,系统中的水拥挤程度变得更加严重,但随着温度降低,这种效应会变弱。如果疏水性源于非极性溶质附近的水结构,那么随着温度的降低,它会增强。在这三种简单溶剂中,只有在溶剂中,当粒子通过强吸引势能相互作用且粒子尺寸与水相同时,才会观察到低温下疏水性的显著减弱。然而,即使在这种情况下,也不能复制冷变性。如果吸引力显著增强,那么复制就可以实现,但这种增强会导致单相的亚稳极限出现。

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