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从林蛙属(两栖纲:无尾目)中分离得到的抗菌肽的小型综述,以及对两栖动物皮肤肽的命名建议。

A mini review on the antimicrobial peptides isolated from the genus Hylarana (Amphibia: Anura) with a proposed nomenclature for amphibian skin peptides.

机构信息

Rajiv Gandhi Centre for Biotechnology (RGCB), Thiruvananthapuram, Kerala, India.

出版信息

Mol Biol Rep. 2012 Jun;39(6):6943-7. doi: 10.1007/s11033-012-1521-3. Epub 2012 Feb 4.

Abstract

Hylarana is a well established frog genus coming under the family Ranidae. An increasing number of antimicrobial peptides have been isolated and characterized from the skin of frogs of this genus. This review covers the antimicrobial peptides reported so far from the frogs of Hylarana genus and to propose a consistent system of nomenclature for amphibian skin peptides. Multiple sequence alignment of the skin peptides from Hylarana genus has grouped them into six peptide families, and three bioactive peptides. Existing nomenclature of amphibian antimicrobial peptides is species centered with no implication to the genus which can lead to disparities, when frogs with same species name belonging to different genus have to be named. As per the proposed system the peptide should have the parent peptide name (e.g. Brevinin-1) followed by two uppercase letter of the genus, if two genera begin with the same letter-first letter should be the same followed by an appropriate second letter (e.g. HU for Huia and HM for Humenerana). This is succeeded by species name in lower case-orthologous peptides from different species may be characterized by the initial letter of that species, when two species begin with the same initial letter, second letter should be used appropriately (e.g. HLat for Hylarana aurata and HLan for Hylarana aurantiaca). Paralogs belonging to the same peptide family are assigned by numbers.

摘要

树蛙属是蛙科下的一个已确立的蛙属。越来越多的抗菌肽已从该属青蛙的皮肤中分离和鉴定出来。本综述涵盖了迄今为止从树蛙属青蛙中报道的抗菌肽,并提出了一个用于两栖动物皮肤肽的命名的一致系统。树蛙属皮肤肽的多重序列比对将它们分为六个肽家族和三个生物活性肽。现有的两栖动物抗菌肽命名法是以物种为中心的,没有涉及属,这可能会导致差异,当具有相同物种名称的青蛙属于不同的属时,就必须对其进行命名。根据所提出的系统,肽应该具有母体肽名(例如 Brevinin-1),后跟两个大写字母的属名,如果两个属名以相同的字母开头,则第一个字母应相同,然后是适当的第二个字母(例如 HU 代表 Huia 和 HM 代表 Humenerana)。接下来是小写的物种名-来自不同物种的同源肽可以用该物种的首字母来表示,当两个物种以相同的首字母开头时,应适当使用第二个字母(例如 HLat 代表 Hylarana aurata 和 HLan 代表 Hylarana aurantiaca)。属于同一肽家族的旁系同源物则通过数字进行分配。

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