系统发育与超越：生命第一棵树的科学、历史和概念意义。
Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life.
机构信息
Department of Molecular, Cellular and Developmental Biology, University of Colorado, Boulder, CO 80309, USA.
出版信息
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1011-8. doi: 10.1073/pnas.1109716109. Epub 2012 Jan 17.
Abstract
In 1977, Carl Woese and George Fox published a brief paper in PNAS that established, for the first time, that the overall phylogenetic structure of the living world is tripartite. We describe the way in which this monumental discovery was made, its context within the historical development of evolutionary thought, and how it has impacted our understanding of the emergence of life and the characterization of the evolutionary process in its most general form.
摘要
1977 年，卡尔·沃斯（Carl Woese）和乔治·福克斯（George Fox）在《美国国家科学院院刊》（PNAS）上发表了一篇简短的论文，首次确立了生命世界的整体系统发生结构是三分的。我们描述了这一重大发现是如何做出的，它在进化思想历史发展中的背景，以及它如何影响我们对生命起源的理解和最普遍形式的进化过程的特征。
相似文献
1
Phylogeny and beyond: Scientific, historical, and conceptual significance of the first tree of life.系统发育与超越：生命第一棵树的科学、历史和概念意义。
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1011-8. doi: 10.1073/pnas.1109716109. Epub 2012 Jan 17.
2
Woese and Fox: Life, rearranged.沃斯和福克斯：生命，重新排列。
Proc Natl Acad Sci U S A. 2012 Jan 24;109(4):1019-21. doi: 10.1073/pnas.1120749109. Epub 2012 Jan 17.
3
Archaea.古生菌
Curr Biol. 2015 Oct 5;25(19):R851-5. doi: 10.1016/j.cub.2015.05.025.
4
A backward view from 16S rRNA to archaea to the universal tree of life to progenotes: reminiscences of Carl Woese.从 16S rRNA 回溯古菌到生命的普遍树再到原核生物：卡尔·沃斯的回忆。
RNA Biol. 2014;11(3):232-5. doi: 10.4161/rna.28228. Epub 2014 Feb 26.
5
Release LTPs104 of the All-Species Living Tree.发布全物种生命树的LTPs104版本。
Syst Appl Microbiol. 2011 May;34(3):169-70. doi: 10.1016/j.syapm.2011.03.001.
6
The legacy of Carl Woese and Wolfram Zillig: from phylogeny to landmark discoveries.卡尔·沃斯和沃尔夫拉姆·齐利格的遗产：从系统发育学到重大发现。
Nat Rev Microbiol. 2013 Oct;11(10):713-9. doi: 10.1038/nrmicro3124.
7
Archaea and the origin of eukaryotes.古菌与真核生物的起源。
Nat Rev Microbiol. 2017 Nov 10;15(12):711-723. doi: 10.1038/nrmicro.2017.133.
8
The effects of model choice and mitigating bias on the ribosomal tree of life.模型选择和减轻偏差对核糖体生命树的影响。
Mol Phylogenet Evol. 2013 Oct;69(1):17-38. doi: 10.1016/j.ympev.2013.05.006. Epub 2013 May 22.
9
Archaea: A Goldmine for Molecular Biologists and Evolutionists.古生菌：分子生物学家和进化论者的宝库。
Methods Mol Biol. 2022;2522:1-21. doi: 10.1007/978-1-0716-2445-6_1.
10
Retrospective. Carl R. Woese (1928-2012).回顾。卡尔·R·伍斯（1928 - 2012）。
Science. 2013 Feb 8;339(6120):661. doi: 10.1126/science.1235219.
引用本文的文献
1
Symbiosis takes a front and center role in biology.共生在生物学中占据着前沿和核心地位。
PLoS Biol. 2024 Apr 5;22(4):e3002571. doi: 10.1371/journal.pbio.3002571. eCollection 2024 Apr.
2
The discovery of archaea: from observed anomaly to consequential restructuring of the phylogenetic tree.古菌的发现：从观察到的异常到系统发育树的重大重构。
Hist Philos Life Sci. 2024 Mar 26;46(2):16. doi: 10.1007/s40656-024-00616-8.
3
A new lexicon in the age of microbiome research.微生物组研究时代的新词汇。
Philos Trans R Soc Lond B Biol Sci. 2024 May 6;379(1901):20230060. doi: 10.1098/rstb.2023.0060. Epub 2024 Mar 18.
4
A Comparative Perspective on Ribosome Biogenesis: Unity and Diversity Across the Tree of Life.核糖体生物发生的比较视角：生命之树的统一性和多样性。
Methods Mol Biol. 2022;2533:3-22. doi: 10.1007/978-1-0716-2501-9_1.
5
Improving Phylogenies Based on Average Nucleotide Identity, Incorporating Saturation Correction and Nonparametric Bootstrap Support.基于平均核苷酸同源性改进系统发育，纳入饱和校正和非参数自举支持。
Syst Biol. 2022 Feb 10;71(2):396-409. doi: 10.1093/sysbio/syab060.
6
Systematic Detection of Large-Scale Multigene Horizontal Transfer in Prokaryotes.系统检测原核生物中的大规模多基因水平转移。
Mol Biol Evol. 2021 May 19;38(6):2639-2659. doi: 10.1093/molbev/msab043.
7
Genome-enabled exploration of microbial ecology and evolution in the sea: a rising tide lifts all boats.基于基因组的海洋微生物生态学和进化研究：水涨船高。
Environ Microbiol. 2021 Mar;23(3):1301-1321. doi: 10.1111/1462-2920.15403. Epub 2021 Feb 2.
8
Photosynthetic Systems Suggest an Evolutionary Pathway to Diderms.光合作用系统提示二型真核生物的进化途径。
Acta Biotheor. 2021 Sep;69(3):343-358. doi: 10.1007/s10441-020-09402-y. Epub 2020 Dec 7.
9
Intrinsic laws of k-mer spectra of genome sequences and evolution mechanism of genomes.基因组序列 k -mer 频谱的内在规律和基因组的进化机制。
BMC Evol Biol. 2020 Nov 23;20(1):157. doi: 10.1186/s12862-020-01723-3.
10
Microbiology and immunology: An ideal partnership for a tango at the gut surface-A tribute to Philippe Sansonetti.微生物学与免疫学：在肠道表面共舞的理想搭档——致敬菲利普·桑索尼。
Cell Microbiol. 2019 Nov;21(11):e13097. doi: 10.1111/cmi.13097. Epub 2019 Aug 26.
本文引用的文献
1
Horizontal gene transfer between bacteria and animals.细菌和动物之间的水平基因转移。
Trends Genet. 2011 Apr;27(4):157-63. doi: 10.1016/j.tig.2011.01.005. Epub 2011 Feb 18.
2
Transcending Darwinism thinking laterally on the tree of life.横向超越达尔文主义思维的生命之树。
Hist Philos Life Sci. 2009;31(2):161-81.
3
Mapping the tree of life: progress and prospects.绘制生命之树：进展与展望。
Microbiol Mol Biol Rev. 2009 Dec;73(4):565-76. doi: 10.1128/MMBR.00033-09.
4
The bacterial species challenge: making sense of genetic and ecological diversity.细菌物种挑战：理解遗传和生态多样性
Science. 2009 Feb 6;323(5915):741-6. doi: 10.1126/science.1159388.
5
Massive horizontal gene transfer in bdelloid rotifers.蛭形轮虫中的大规模水平基因转移。
Science. 2008 May 30;320(5880):1210-3. doi: 10.1126/science.1156407.
6
Classification of methanogenic bacteria by 16S ribosomal RNA characterization.通过16S核糖体RNA特征对产甲烷菌进行分类。
Proc Natl Acad Sci U S A. 1977 Oct;74(10):4537-41. doi: 10.1073/pnas.74.10.4537.
7
The Main Outlines of Bacterial Classification.细菌分类大纲
J Bacteriol. 1941 Oct;42(4):437-66. doi: 10.1128/jb.42.4.437-466.1941.
8
Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea.海洋浮游细菌和古菌之间的视紫质侧向基因转移
Nature. 2006 Feb 16;439(7078):847-50. doi: 10.1038/nature04435.
9
The prokaryote-eukaryote dichotomy: meanings and mythology.原核生物与真核生物的二分法：意义与神话
Microbiol Mol Biol Rev. 2005 Jun;69(2):292-305. doi: 10.1128/MMBR.69.2.292-305.2005.
10
A new biology for a new century.新世纪的新生物学。
Microbiol Mol Biol Rev. 2004 Jun;68(2):173-86. doi: 10.1128/MMBR.68.2.173-186.2004.
Zotero 插件