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通过间歇体扩散和表面扩散在洞壁空腔中寻找小孔。

Search for a small hole in a cavity wall by intermittent bulk and surface diffusion.

机构信息

Mathematical and Statistical Computing Laboratory, Division of Computational Bioscience, Center for Information Technology, National Institutes of Health, Bethesda, Maryland 20892, USA.

出版信息

J Chem Phys. 2012 Feb 7;136(5):054115. doi: 10.1063/1.3682243.

DOI:10.1063/1.3682243
PMID:22320733
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3293344/
Abstract

We study the search of a small round hole in the wall of a spherical cavity by a diffusing particle, which can reversibly bind to the cavity wall and diffuse on the surface being in the bound state. There are two channels for the particle first passage to the hole, through the bulk, and through the surface. We propose a coarse-grained model of the search process and use it to derive simple approximate formulas for the mean time required for the particle to reach the hole for the first time and for the probability of the first passage to the hole through the bulk channel. This is done for two distributions of the particle starting point: (1) Uniform distribution over the cavity volume and (2) uniform distribution over the cavity wall. We check the accuracy of the approximate formulas by comparing their predictions with the corresponding quantities found by solving the mixed bulk-surface diffusion problem numerically by the finite difference method. The comparison shows excellent agreement between the analytical and numerical results.

摘要

我们研究了扩散粒子在球形腔壁上的小孔的搜索,该粒子可以可逆地与腔壁结合并在束缚状态下在表面上扩散。粒子首次通过孔有两种途径,即通过体相和通过表面。我们提出了搜索过程的粗粒化模型,并利用它推导出了首次到达孔所需的平均时间和通过体相通道首次通过孔的概率的简单近似公式。这是针对粒子起始点的两种分布进行的:(1) 腔体内体积的均匀分布和 (2) 腔壁的均匀分布。我们通过有限差分法数值求解混合体-表面扩散问题来检验近似公式的准确性,将其预测结果与相应的数值结果进行比较。比较表明,分析结果与数值结果之间具有极好的一致性。

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本文引用的文献

1
Optimal reaction time for surface-mediated diffusion.表面介导扩散的最佳反应时间。
Phys Rev Lett. 2010 Oct 8;105(15):150606. doi: 10.1103/PhysRevLett.105.150606.
2
Narrow-escape times for diffusion in microdomains with a particle-surface affinity: mean-field results.微域中具有粒子-表面亲和力的扩散的狭窄逃逸时间:平均场结果。
J Chem Phys. 2010 Jun 21;132(23):235101. doi: 10.1063/1.3442906.
3
Structure and function of dendritic spines.树突棘的结构与功能。
Annu Rev Physiol. 2002;64:313-53. doi: 10.1146/annurev.physiol.64.081501.160008.
4
Diffusion-controlled reactions on spherical surfaces. Application to bacteriophage tail fiber attachment.球面上的扩散控制反应。在噬菌体尾丝附着中的应用。
Biophys J. 1979 Sep;27(3):447-53. doi: 10.1016/S0006-3495(79)85228-5.