Department of Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Hum Mol Genet. 2012 May 15;21(10):2194-204. doi: 10.1093/hmg/dds034. Epub 2012 Feb 10.
The ongoing requirement in adult heart for transcription factors with key roles in cardiac development is not well understood. We recently demonstrated that TBX20, a transcriptional regulator required for cardiac development, has key roles in the maintenance of functional and structural phenotypes in adult mouse heart. Conditional ablation of Tbx20 in adult cardiomyocytes leads to a rapid onset and progression of heart failure, with prominent conduction and contractility phenotypes that lead to death. Here we describe a more comprehensive molecular characterization of the functions of TBX20 in adult mouse heart. Coupling genome-wide chromatin immunoprecipitation and transcriptome analyses (RNA-Seq), we identified a subset of genes that change expression in Tbx20 adult cardiomyocyte-specific knockout hearts which are direct downstream targets of TBX20. This analysis revealed a dual role for TBX20 as both a transcriptional activator and a repressor, and that each of these functions regulates genes with very specialized and distinct molecular roles. We also show how TBX20 binds to its targets genome-wide in a context-dependent manner, using various cohorts of co-factors to either promote or repress distinct genetic programs within adult heart. Our integrative approach has uncovered several novel aspects of TBX20 and T-box protein function within adult heart. Sequencing data accession number (http://www.ncbi.nlm.nih.gov/geo): GSE30943.
成人心脏中对心脏发育起关键作用的转录因子的持续需求尚未得到很好的理解。我们最近证明,TBX20 是心脏发育所必需的转录调节因子,在维持成年小鼠心脏的功能和结构表型方面具有关键作用。TBX20 在成年心肌细胞中的条件性缺失会导致心力衰竭的快速发生和进展,伴有明显的传导和收缩表型,导致死亡。在这里,我们描述了 TBX20 在成年小鼠心脏中的功能的更全面的分子特征。通过全基因组染色质免疫沉淀和转录组分析(RNA-Seq),我们鉴定出一组在 TBX20 成年心肌细胞特异性敲除心脏中表达变化的基因,这些基因是 TBX20 的直接下游靶标。这项分析揭示了 TBX20 作为转录激活剂和抑制剂的双重作用,并且这两种功能都调节具有非常特殊和独特分子作用的基因。我们还展示了 TBX20 如何以依赖于上下文的方式在全基因组范围内与靶标结合,使用各种共因子队列来促进或抑制成年心脏内的不同遗传程序。我们的综合方法揭示了 TBX20 和 T 盒蛋白在成年心脏中的几个新的功能方面。测序数据访问号(http://www.ncbi.nlm.nih.gov/geo):GSE30943。