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ppGpp:超越 RNA 聚合酶的魔力。

ppGpp: magic beyond RNA polymerase.

机构信息

Department of Microbiology, University of Washington, Health Sciences Building K116, 1959 NE Pacific St., Box 357710, Seattle, Washington 98195-7710, USA.

出版信息

Nat Rev Microbiol. 2012 Feb 16;10(3):203-12. doi: 10.1038/nrmicro2720.

DOI:10.1038/nrmicro2720
PMID:22337166
Abstract

During stress, bacteria undergo extensive physiological transformations, many of which are coordinated by ppGpp. Although ppGpp is best known for enhancing cellular resilience by redirecting the RNA polymerase (RNAP) to certain genes, it also acts as a signal in many other cellular processes in bacteria. After a brief overview of ppGpp biosynthesis and its impact on promoter selection by RNAP, we discuss how bacteria exploit ppGpp to modulate the synthesis, stability or activity of proteins or regulatory RNAs that are crucial in challenging environments, using mechanisms beyond the direct regulation of RNAP activity.

摘要

在应激状态下,细菌会经历广泛的生理转变,其中许多转变是由 ppGpp 协调的。虽然 ppGpp 因将 RNA 聚合酶(RNAP)重定向到某些基因而增强细胞的弹性而广为人知,但它在细菌的许多其他细胞过程中也充当信号。在简要概述 ppGpp 的生物合成及其对 RNAP 启动子选择的影响之后,我们将讨论细菌如何利用 ppGpp 来调节在挑战性环境中至关重要的蛋白质或调节 RNA 的合成、稳定性或活性,其机制超出了对 RNAP 活性的直接调节。

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本文引用的文献

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The RpoS-mediated general stress response in Escherichia coli.RpoS 介导的大肠杆菌一般性应激反应。
Annu Rev Microbiol. 2011;65:189-213. doi: 10.1146/annurev-micro-090110-102946.
2
Regulation of alternative sigma factor use.σ因子的调控。
Annu Rev Microbiol. 2011;65:37-55. doi: 10.1146/annurev.micro.112408.134219.
3
Circuitry linking the Csr and stringent response global regulatory systems.连接 Csr 和严格反应全局调控系统的电路。
用EPS抑制剂治疗沙门氏菌会影响其进化,且不会选择出对生物膜抑制的抗性。
NPJ Biofilms Microbiomes. 2025 May 6;11(1):73. doi: 10.1038/s41522-025-00693-y.
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Synthetic Biology in Natural Product Biosynthesis.天然产物生物合成中的合成生物学
Chem Rev. 2025 Apr 9;125(7):3814-3931. doi: 10.1021/acs.chemrev.4c00567. Epub 2025 Mar 21.
5
(p)ppGpp and DksA play a crucial role in reducing the efficacy of β-lactam antibiotics by modulating bacterial membrane permeability.(p)ppGpp和DksA通过调节细菌膜通透性在降低β-内酰胺类抗生素的疗效中发挥关键作用。
Microbiol Spectr. 2025 Apr;13(4):e0116924. doi: 10.1128/spectrum.01169-24. Epub 2025 Feb 24.
6
Bimodality in E. coli gene expression: Sources and robustness to genome-wide stresses.大肠杆菌基因表达的双峰性:全基因组应激的来源及稳健性
PLoS Comput Biol. 2025 Feb 13;21(2):e1012817. doi: 10.1371/journal.pcbi.1012817. eCollection 2025 Feb.
7
Molecular turn in pathogenesis: implications of the frameshift for bacterial survival in human macrophage.发病机制中的分子转变:移码对细菌在人类巨噬细胞中存活的影响
Emerg Microbes Infect. 2025 Dec;14(1):2467778. doi: 10.1080/22221751.2025.2467778. Epub 2025 Mar 3.
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Comparison of transcriptomic profiles between intracellular and extracellular Bartonella henselae.亨氏巴尔通体细胞内和细胞外转录组图谱的比较。
Commun Biol. 2025 Jan 29;8(1):143. doi: 10.1038/s42003-025-07535-9.
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mBio. 2025 Feb 5;16(2):e0351124. doi: 10.1128/mbio.03511-24. Epub 2024 Dec 27.
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Mol Microbiol. 2011 Feb;79(4):830-45. doi: 10.1111/j.1365-2958.2010.07498.x. Epub 2010 Dec 30.
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EMBO J. 2011 Mar 2;30(5):931-44. doi: 10.1038/emboj.2011.5. Epub 2011 Jan 28.
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Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infection.两种新型点突变降低临床金黄色葡萄球菌对利奈唑胺的敏感性,并激活严谨反应,促进持续性感染。
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