Graduate School of Biology-Oriented Science and Technology, Kinki University, Kinokawa, Japan.
Biophys J. 2012 Jan 18;102(2):L8-10. doi: 10.1016/j.bpj.2011.12.015.
We studied conformational fluctuations of the transcription factor c-Myb R2 subdomain (52 residues with three Trp) at high pressure and low temperature (5°C) using two different spectroscopic methods, Trp fluorescence and (1)H NMR, on its chemically stable mutant C130I (pseudo-wild-type (WT(S))), which has a large internal cavity. As pressure was increased from 3 to 300 MPa, the Trp fluorescence λ(max) of WT(S) shifted from 342 to ∼355 nm, clearly showing that the three Trp rings become fully exposed to the polar environment, which usually is taken to indicate that the protein underwent unfolding. In contrast, as pressure was increased from 3 to 300 MPa, the high-field-shifted (1)H NMR signals characteristic of the folded state showed a still higher-field shift, but no significant changes in their intensity. The last result unequivocally shows that the protein remains largely folded at 300 MPa. The apparent discrepancy between the two predictions would only be solved if one were to postulate the existence of an extensively hydrated but folded state in WT(S). Intriguingly, such a state was not found in a cavity-filling mutant of WT(S), C130I/V103L, suggesting that this state is mediated by cavity hydration. The generality and significance of this state in proteins are discussed.
我们使用两种不同的光谱方法,即色氨酸荧光和(1)H NMR,研究了转录因子 c-Myb R2 亚结构域(含三个色氨酸的 52 个残基)在高压和低温(5°C)下的构象波动。该亚结构域位于一种化学稳定的突变体 C130I(假野生型(WT(S)))中,其具有较大的内部空腔。随着压力从 3 MPa 增加到 300 MPa,WT(S)的色氨酸荧光 λ(max)从 342nm 移至约 355nm,这清楚地表明三个色氨酸环完全暴露于极性环境,通常这表明蛋白质发生了展开。相比之下,随着压力从 3 MPa 增加到 300 MPa,折叠状态的高场位移(1)H NMR 信号显示出更高的场位移,但强度没有明显变化。最后一个结果明确表明,在 300 MPa 下蛋白质仍然主要处于折叠状态。只有假设 WT(S)中存在广泛水合但折叠的状态,才能解决这两种预测之间的明显差异。有趣的是,在 WT(S)的空腔填充突变体 C130I/V103L 中没有发现这种状态,这表明这种状态是由空腔水合介导的。讨论了这种状态在蛋白质中的普遍性和重要性。