DIVAPRA, University of Turin, Grugliasco, TO, Italy.
Microb Ecol. 2012 Jul;64(1):171-86. doi: 10.1007/s00248-012-0014-1. Epub 2012 Feb 16.
The prokaryotic community in Fe-As co-precipitation product from a groundwater storage tank in Bangladesh was investigated over a 5-year period to assess the diversity of the community and to infer biogeochemical mechanisms that may contribute to the formation and stabilisation of co-precipitation products and to Fe and As redox cycling. Partial 16S rRNA gene sequences from Bacteria and Archaea, functional markers (mcrA and dsrB) and iron-oxidising Gallionella-related 16S rRNA gene sequences were determined using denaturing gradient gel electrophoresis (DGGE). Additionally, a bacterial 16S rRNA gene library was also constructed from one representative sample. Biogeochemical characterization demonstrated that co-precipitation products consist of a mixture of inorganic minerals, mainly hydrous ferric oxides, intimately associated with organic matter of microbial origin that contribute to the chemical and physical stabilisation of a poorly ordered structure. DGGE analysis and polymerase chain reaction-cloning revealed that the diverse bacterial community structure in the co-precipitation product progressively stabilised with time resulting in a prevalence of methylotrophic Betaproteobacteria, while the archaeal community was less diverse and was dominated by members of the Euryarchaeota. Results show that Fe-As co-precipitation products provide a habitat characterised by anoxic/oxic niches that supports a phylogenetically and metabolically diverse group of prokaryotes involved in metal, sulphur and carbon cycling, supported by the presence of Gallionella-like iron-oxidizers, methanogens, methylotrophs, and sulphate reducers. However, no phylotypes known to be directly involved in As(V) respiration or As(III) oxidation were found.
在孟加拉国一个地下水储存罐中,研究了铁砷共沉淀产物中的原核生物群落,以评估群落的多样性,并推断可能有助于共沉淀产物以及铁和砷的氧化还原循环形成和稳定的生物地球化学机制。使用变性梯度凝胶电泳(DGGE)测定了细菌和古菌的部分 16S rRNA 基因序列、功能标记(mcrA 和 dsrB)以及与铁氧化有关的Gallionella 相关 16S rRNA 基因序列。此外,还从一个有代表性的样本构建了细菌 16S rRNA 基因文库。生物地球化学特征表明,共沉淀产物由主要为水合氧化铁的无机矿物混合物组成,与微生物来源的有机物密切相关,这有助于化学和物理稳定结构不良的物质。DGGE 分析和聚合酶链反应克隆表明,共沉淀产物中的多样细菌群落结构随着时间的推移逐渐稳定,导致甲基营养型 Betaproteobacteria 流行,而古菌群落的多样性较低,主要由广古菌门的成员主导。结果表明,铁砷共沉淀产物提供了一个具有缺氧/好氧小生境的栖息地,支持了参与金属、硫和碳循环的具有系统发育和代谢多样性的原核生物群,这得到了类似于 Gallionella 的铁氧化菌、产甲烷菌、甲基营养菌和硫酸盐还原菌的存在的支持。然而,没有发现直接参与 As(V)呼吸或 As(III)氧化的已知类群。