Department of Microbiology, Ohio State University, Columbus, OH, United States of America.
School of Earth Sciences, Ohio State University, Columbus, OH, United States of America.
PLoS One. 2019 Sep 6;14(9):e0221694. doi: 10.1371/journal.pone.0221694. eCollection 2019.
Despite the importance of microbial activity in mobilizing arsenic in groundwater aquifers, the phylogenetic distribution of contributing microbial metabolisms is understudied. Groundwater samples from Ohio aquifers were analyzed using metagenomic sequencing to identify functional potential that could drive arsenic cycling, and revealed mechanisms for direct (i.e., Ars system) and indirect (i.e., iron reduction) arsenic mobilization in all samples, despite differing geochemical conditions. Analyses of 194 metagenome-assembled genomes (MAGs) revealed widespread functionality related to arsenic mobilization throughout the bacterial tree of life. While arsB and arsC genes (components of an arsenic resistance system) were found in diverse lineages with no apparent phylogenetic bias, putative aioA genes (aerobic arsenite oxidase) were predominantly identified in Methylocystaceae MAGs. Both previously described and undescribed respiratory arsenate reduction potential via arrA was detected in Betaproteobacteria, Deltaproteobacteria, and Nitrospirae MAGs, whereas sulfate reduction potential was primarily limited to members of the Deltaproteobacteria and Nitrospirae. Lastly, iron reduction potential was detected in the Ignavibacteria, Deltaproteobacteria, and Nitrospirae. These results expand the phylogenetic distribution of taxa that may play roles in arsenic mobilization in subsurface systems. Specifically, the Nitrospirae are a much more functionally diverse group than previously assumed and may play key biogeochemical roles in arsenic-contaminated ecosystems.
尽管微生物活动在地下水含水层中砷的迁移中具有重要意义,但参与的微生物代谢途径的系统发育分布仍研究不足。本研究使用宏基因组测序分析了来自俄亥俄含水层的地下水样本,以确定可能驱动砷循环的功能潜力,并揭示了所有样本中直接(即 Ars 系统)和间接(即铁还原)砷迁移的机制,尽管存在不同的地球化学条件。对 194 个宏基因组组装基因组(MAG)的分析揭示了整个细菌生命树中广泛存在与砷迁移相关的功能。虽然 ArsB 和 ArsC 基因(砷抗性系统的组成部分)存在于具有无明显系统发育偏见的多种谱系中,但推定的 aioA 基因(好氧亚砷酸盐氧化酶)主要在甲基球菌科 MAG 中鉴定到。在 Betaproteobacteria、Deltaproteobacteria 和 Nitrospirae MAG 中检测到了通过 arrA 描述的先前描述和未描述的呼吸砷酸盐还原潜力,而硫酸盐还原潜力主要限于 Deltaproteobacteria 和 Nitrospirae 的成员。最后,在 Ignavibacteria、Deltaproteobacteria 和 Nitrospirae 中检测到了铁还原潜力。这些结果扩展了可能在地下系统中砷迁移中发挥作用的分类单元的系统发育分布。具体而言,与之前的假设相比,Nitrospirae 是一个功能多样性更高的群体,并且可能在砷污染生态系统中发挥关键的生物地球化学作用。