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钴胺素依赖性蛋氨酸合成酶中同型半胱氨酸向蛋氨酸转化的还原消除途径。

Reductive elimination pathway for homocysteine to methionine conversion in cobalamin-dependent methionine synthase.

机构信息

Department of Chemistry, University of Louisville, Louisville, KY 40292, USA.

出版信息

J Biol Inorg Chem. 2012 Apr;17(4):611-9. doi: 10.1007/s00775-012-0881-4. Epub 2012 Feb 23.

DOI:10.1007/s00775-012-0881-4
PMID:22358333
Abstract

Density functional theory has been applied to investigate the methyl transfer from methylcobalamin (MeCbl) cofactor to homocysteine (Hcy) as catalyzed by methionine synthase (MetH). Specifically, the S(N)2 and the reductive elimination pathways have been probed as the possible mechanistic pathways for the methyl transfer reaction. The calculations indicate that the activation barrier for the reductive elimination reaction (24.4 kcal mol(-1)) is almost four times higher than that for the S(N)2 reaction (7.3 kcal mol(-1)). This high energy demand of the reductive elimination pathway is rooted in the structural distortion of the corrin ring that is induced en route to the formation of the triangular transition state. Furthermore, the reductive elimination reaction demands the syn accommodation of the methyl group and the substrate over the upper face of the corrin ring, which also accounts for the high energy demand of the reaction. Consequently, the reductive elimination pathway for MetH-catalyzed methyl transfer from MeCbl to Hcy cannot be considered as one of the possible mechanistic routes.

摘要

密度泛函理论已被应用于研究甲硫氨酸合酶(MetH)催化的钴胺素(MeCbl)辅酶与高半胱氨酸(Hcy)之间的甲基转移。具体而言,S(N)2 和还原消除途径已被探测为甲基转移反应的可能机理途径。计算表明,还原消除反应的活化能垒(24.4 kcal mol(-1)))几乎是 S(N)2 反应(7.3 kcal mol(-1)))的四倍。还原消除途径的这种高能量需求源于在形成三角过渡态的过程中诱导的钴胺环的结构变形。此外,还原消除反应需要甲基和底物在钴胺环的上表面上进行顺式容纳,这也导致了反应的高能量需求。因此,MetH 催化的从 MeCbl 到 Hcy 的甲基转移的还原消除途径不能被认为是可能的机理途径之一。

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本文引用的文献

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Role of the Axial Base in the Modulation of the Cob(I)alamin Electronic Properties: Insight from QM/MM, DFT, and CASSCF Calculations.轴向碱基在钴胺素电子性质调控中的作用:来自量子力学/分子力学、密度泛函理论和完全活性空间自洽场计算的见解。
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Electronic structure of cofactor-substrate reactant complex involved in the methyl transfer reaction catalyzed by cobalamin-dependent methionine synthase.
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Methylcobalamin's full- vs. "half"-strength cobalt-carbon sigma bonds and bond dissociation enthalpies: A >10(15) Co-CH3 homolysis rate enhancement following one-antibonding-electron reduction of methlycobalamin.甲钴胺的全强度与“半”强度钴-碳西格玛键和键离解焓:在钴胺素的一个反键电子还原后, >10(15) Co-CH3 均裂速率增强。
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Cobalamin uptake and reactivation occurs through specific protein interactions in the methionine synthase-methionine synthase reductase complex.钴胺素的摄取和再激活通过甲硫氨酸合酶-甲硫氨酸合酶还原酶复合物中的特定蛋白质相互作用发生。
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