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轴向碱基在钴胺素电子性质调控中的作用:来自量子力学/分子力学、密度泛函理论和完全活性空间自洽场计算的见解。

Role of the Axial Base in the Modulation of the Cob(I)alamin Electronic Properties: Insight from QM/MM, DFT, and CASSCF Calculations.

作者信息

Kumar Neeraj, Alfonso-Prieto Mercedes, Rovira Carme, Lodowski Piotr, Jaworska Maria, Kozlowski Pawel M

机构信息

Department of Chemistry, University of Louisville , Louisville, Kentucky 40292, United States.

Institut de Química Teòrica i Computacional (IQTCUB) and Computer Simulation and Modeling Laboratory (CoSMoLab), Parc Científic de Barcelona, Baldiri Reixac 10-12, 08028 Barcelona, Spain.

出版信息

J Chem Theory Comput. 2011 May 10;7(5):1541-51. doi: 10.1021/ct200065s. Epub 2011 Apr 14.

Abstract

Quantum chemical computations are used to study the electronic and structural properties of the cob(I)alamin intermediate of the cobalamin-dependent methionine synthase (MetH). QM(DFT)/MM calculations on the methylcobalamin (MeCbl) binding domain of MetH reveal that the transfer of the methyl group to the substrate is associated with the displacement of the histidine axial base (His759). The axial base oscillates between a His-on form in the Me-cob(III)lamin:MetH resting state, where the Co-N(His759) distance is 2.27 Å, and a His-off form in the cob(I)alamin:MetH intermediate (2.78 Å). Furthermore, QM/MM and gas phase DFT calculations based on an unrestricted formalism show that the cob(I)alamin intermediate exhibits a complex electronic structure, intermediate between the Co(I) and Co(II)-radical corrin states. To understand this complexity, the electronic structure of Im···[Cob(I)alamin] is investigated using multireference CASSCF/QDPT2 calculations on gas phase models where the axial histidine is modeled by imidazole (Im). It is found that the correlated ground state wave function consists of a closed-shell Co(I) (d(8)) configuration and a diradical contribution, which can be described as a Co(II) (d(7))-radical corrin (π*)(1) configuration. Moreover, the contribution of these two configurations depends on the Co-NIm distance. At short Co-NIm distances (<2.5 Å), the dominant electronic configuration is the diradical state, while for longer distances it is the closed-shell state. The implications of this finding are discussed in the context of the methyl transfer reaction between the Me-H4folate substrate and cob(I)alamin.

摘要

量子化学计算用于研究钴胺素依赖性蛋氨酸合酶(MetH)的钴胺素(I)中间产物的电子和结构性质。对MetH的甲基钴胺素(MeCbl)结合域进行的QM(DFT)/MM计算表明,甲基基团向底物的转移与组氨酸轴向碱基(His759)的位移相关。轴向碱基在Me-钴胺素(III):MetH静止状态下的His-on形式(Co-N(His759)距离为2.27 Å)和钴胺素(I):MetH中间产物的His-off形式(2.78 Å)之间振荡。此外,基于无限制形式的QM/MM和气相DFT计算表明,钴胺素(I)中间产物呈现出复杂的电子结构,介于Co(I)和Co(II)-自由基咕啉状态之间。为了理解这种复杂性,使用多参考CASSCF/QDPT2计算对气相模型中咪唑(Im)模拟轴向组氨酸的Im···[钴胺素(I)]的电子结构进行了研究。发现相关的基态波函数由闭壳层Co(I)(d(8))构型和双自由基贡献组成,可描述为Co(II)(d(7))-自由基咕啉(π*)(1)构型。此外,这两种构型的贡献取决于Co-NIm距离。在短Co-NIm距离(<2.5 Å)时,主要的电子构型是双自由基状态,而在较长距离时是闭壳层状态。在Me-H4叶酸底物与钴胺素(I)之间的甲基转移反应的背景下讨论了这一发现的意义。

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