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分子动力学方法研究单油酸甘油酯 H(II)中间相的水结构。

Molecular dynamics approach to water structure of H(II) mesophase of monoolein.

机构信息

The Casali Institute of Applied Chemistry, The Hebrew University of Jerusalem, Edmond J. Safra Campus, Givat Ram, Jerusalem 91904, Israel.

出版信息

J Chem Phys. 2012 Feb 21;136(7):074509. doi: 10.1063/1.3685509.

Abstract

The goal of the present work is to study theoretically the structure of water inside the water cylinder of the inverse hexagonal mesophase (H(II)) of glyceryl monooleate (monoolein, GMO), using the method of molecular dynamics. To simplify the computational model, a fixed structure of the GMO tube is maintained. The non-standard cylindrical geometry of the system required the development and application of a novel method for obtaining the starting distribution of water molecules. A predictor-corrector schema is employed for generation of the initial density of water. Molecular dynamics calculations are performed at constant volume and temperature (NVT ensemble) with 1D periodic boundary conditions applied. During the simulations the lipid structure is kept fixed, while the dynamics of water is unrestrained. Distribution of hydrogen bonds and density as well as radial distribution of water molecules across the water cylinder show the presence of water structure deep in the cylinder (about 6 Å below the GMO heads). The obtained results may help understanding the role of water structure in the processes of insertion of external molecules inside the GMO∕water system. The present work has a semi-quantitative character and it should be considered as the initial stage of more comprehensive future theoretical studies.

摘要

本工作的目的是使用分子动力学方法从理论上研究甘油单油酸酯(单油酸甘油脂,GMO)反六方中间相(H(II))水筒内的水结构。为简化计算模型,保持 GMO 管的固定结构。由于系统的非标准圆柱形几何形状,需要开发和应用一种新的方法来获得水分子的初始分布。采用预测-校正方案生成初始水密度。在体积和温度恒定(NVT 系综)的条件下进行分子动力学计算,并施加一维周期性边界条件。在模拟过程中,脂质结构保持固定,而水的动力学不受限制。氢键分布、密度以及水分子在整个水筒内的径向分布表明,在水筒内深处(GMO 头部下方约 6 Å)存在水结构。所得结果可能有助于理解水结构在外部分子插入 GMO/水体系过程中的作用。本工作具有半定量性质,应被视为未来更全面理论研究的初始阶段。

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