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具有共享粒子库的相互竞争的完全非对称简单排斥过程的混合群体。

Mixed population of competing totally asymmetric simple exclusion processes with a shared reservoir of particles.

作者信息

Greulich Philip, Ciandrini Luca, Allen Rosalind J, Romano M Carmen

机构信息

SUPA, School of Physics & Astronomy, University of Edinburgh, James Clerk Maxwell Building, King's Buildings, Mayfield Road, Edinburgh EH9 3JZ, United Kingdom.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Jan;85(1 Pt 1):011142. doi: 10.1103/PhysRevE.85.011142. Epub 2012 Jan 27.

Abstract

We introduce a mean-field theoretical framework to describe multiple totally asymmetric simple exclusion processes (TASEPs) with different lattice lengths and entry and exit rates, competing for a finite reservoir of particles. We present relations for the partitioning of particles between the reservoir and the lattices: These relations allow us to show that competition for particles can have nontrivial effects on the phase behavior of individual lattices. For a system with nonidentical lattices, we find that when a subset of lattices undergoes a phase transition from low to high density, the entire set of lattice currents becomes independent of total particle number. We generalize our approach to systems with a continuous distribution of lattice parameters, for which we demonstrate that measurements of the current carried by a single lattice type can be used to extract the entire distribution of lattice parameters. Our approach applies to populations of TASEPs with any distribution of lattice parameters and could easily be extended beyond the mean-field case.

摘要

我们引入一个平均场理论框架来描述多个具有不同晶格长度以及进出速率的完全非对称简单排斥过程(TASEP),这些过程竞争有限的粒子库。我们给出了粒子在粒子库和晶格之间分配的关系:这些关系使我们能够表明,对粒子的竞争会对各个晶格的相行为产生非平凡的影响。对于具有不同晶格的系统,我们发现当一部分晶格经历从低密度到高密度的相变时,整个晶格电流集变得与总粒子数无关。我们将我们的方法推广到具有晶格参数连续分布的系统,对于此类系统,我们证明通过测量单一晶格类型所承载的电流可用于提取晶格参数的整个分布。我们的方法适用于具有任何晶格参数分布的TASEP群体,并且可以很容易地扩展到平均场情况之外。

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Physics of collective transport and traffic phenomena in biology: Progress in 20 years.
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2
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3
Trafficlike collective movement of ants on trails: absence of a jammed phase.
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4
Stochasticity and traffic jams in the transcription of ribosomal RNA: Intriguing role of termination and antitermination.
Proc Natl Acad Sci U S A. 2008 Nov 25;105(47):18159-64. doi: 10.1073/pnas.0806084105. Epub 2008 Nov 18.
5
Interacting RNA polymerase motors on a DNA track: effects of traffic congestion and intrinsic noise on RNA synthesis.
Phys Rev E Stat Nonlin Soft Matter Phys. 2008 Jan;77(1 Pt 1):011921. doi: 10.1103/PhysRevE.77.011921. Epub 2008 Jan 25.
6
Inhomogeneous exclusion processes with extended objects: the effect of defect locations.
Phys Rev E Stat Nonlin Soft Matter Phys. 2007 Nov;76(5 Pt 1):051113. doi: 10.1103/PhysRevE.76.051113. Epub 2007 Nov 13.
7
Intracellular transport by single-headed kinesin KIF1A: effects of single-motor mechanochemistry and steric interactions.
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8
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9
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10
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Phys Rev E Stat Nonlin Soft Matter Phys. 2003 Aug;68(2 Pt 1):021910. doi: 10.1103/PhysRevE.68.021910. Epub 2003 Aug 18.

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