School of Systems Biomedical Science, Soongsil University, Seoul 156-743, South Korea.
Gene. 2012 May 10;499(1):160-2. doi: 10.1016/j.gene.2012.03.010. Epub 2012 Mar 8.
A previous genome-wide association study (GWAS) failed to discover any nucleotide sequence variant associated with susceptibility to vascular dementia (VaD) and remained a problem of false negatives produced by a low statistical power. The current study was conducted to identify such potential false negatives and to provide comprehensive evidence for the most plausible predisposing genetic factor using large-scale Korean cohorts. We identified the gene encoding retinitis pigmentosa GTPase regulator-interacting protein 1-like (RPGRIP1L) with multiple nucleotide variants associated with susceptibility to VaD by a modest significant threshold (P<10(-4)). Genetic associations were intensively examined with its sequence variants using 207 VaD patients and 207 age- and gender-matched control subjects. Genetic association analysis with dense variants in the region associated with VaD revealed 3 variants (P<0.0017) in strong linkage. Further analysis with VaD-related phenotypes using Korean Association REsource (KARE) cohort data showed that the region of the gene was associated with alanine aminotransferase (ALT), aspartate aminotransferase (AST), and blood pressure (BP) (P<7.6×10(-4)). The current study provided the first evidence of the association between RPGRIP1L gene and susceptibility of VaD. Functional studies are needed to understand underlying biological mechanism of the genetic association.
先前的全基因组关联研究(GWAS)未能发现任何与血管性痴呆(VaD)易感性相关的核苷酸序列变异,这仍然是低统计功效产生的假阴性问题。本研究旨在通过大规模的韩国队列,鉴定出这些潜在的假阴性,并为最合理的易感遗传因素提供全面的证据。我们通过适度显著阈值(P<10(-4))鉴定出与 VaD 易感性相关的多个核苷酸变异的编码视网膜色素变性 GTP 酶调节蛋白相互作用蛋白 1 样(RPGRIP1L)的基因。使用 207 名 VaD 患者和 207 名年龄和性别匹配的对照,对其序列变异进行了密集的遗传关联分析。与 VaD 相关区域的密集变体的遗传关联分析显示,有 3 个变体(P<0.0017)存在强连锁。使用韩国关联资源(KARE)队列数据对与 VaD 相关的表型进行进一步分析表明,该基因区域与丙氨酸转氨酶(ALT)、天冬氨酸转氨酶(AST)和血压(BP)相关(P<7.6×10(-4))。本研究首次提供了 RPGRIP1L 基因与 VaD 易感性之间关联的证据。需要进行功能研究,以了解遗传关联的潜在生物学机制。