Department of Pharmaceutical Chemistry, University of California, 600 16th Street, San Francisco, California 94158-2517, USA.
J Am Chem Soc. 2012 Apr 18;134(15):6673-84. doi: 10.1021/ja211499q. Epub 2012 Apr 4.
CYP125 from Mycobacterium tuberculosis catalyzes sequential oxidation of the cholesterol side-chain terminal methyl group to the alcohol, aldehyde, and finally acid. Here, we demonstrate that CYP125 simultaneously catalyzes the formation of five other products, all of which result from deformylation of the sterol side chain. The aldehyde intermediate is shown to be the precursor of both the conventional acid metabolite and the five deformylation products. The acid arises by protonation of the ferric-peroxo anion species and formation of the ferryl-oxene species, also known as Compound I, followed by hydrogen abstraction and oxygen transfer. The deformylation products arise by addition of the same ferric-peroxo anion to the aldehyde intermediate to give a peroxyhemiacetal that leads to C-C bond cleavage. This bifurcation of the catalytic sequence has allowed us to examine the effect of electron donation by the proximal ligand on the properties of the ferric-peroxo anion. Replacement of the cysteine thiolate iron ligand by a selenocysteine results in UV-vis, EPR, and resonance Raman spectral changes indicative of an increased electron donation from the proximal selenolate ligand to the iron. Analysis of the product distribution in the reaction of the selenocysteine substituted enzyme reveals a gain in the formation of the acid (Compound I pathway) at the expense of deformylation products. These observations are consistent with an increase in the pK(a) of the ferric-peroxo anion, which favors its protonation and, therefore, Compound I formation.
结核分枝杆菌中的 CYP125 可催化胆固醇侧链末端甲基的连续氧化,生成醇、醛,最终生成酸。在这里,我们证明 CYP125 同时催化形成了另外 5 种产物,它们均来自固醇侧链的去甲酰化。醛中间体是常规酸代谢产物和 5 种去甲酰化产物的前体。酸的生成是通过铁-过氧阴离子物种的质子化和铁氧烯物种(也称为化合物 I)的形成,随后进行氢原子的提取和氧转移。去甲酰化产物是通过同一铁-过氧阴离子与醛中间体的加成生成过氧半缩醛,导致 C-C 键断裂而产生。这种催化序列的分支允许我们研究近端配体供电子对铁-过氧阴离子性质的影响。用硒代半胱氨酸替代半胱氨酸硫醇铁配体导致紫外-可见、电子顺磁共振和共振拉曼光谱发生变化,表明来自近端硒代酸盐配体的电子供体增加。对硒代半胱氨酸取代酶的反应产物分布的分析表明,酸(化合物 I 途径)的形成增加,而去甲酰化产物减少。这些观察结果与铁-过氧阴离子 pK(a)的增加一致,这有利于其质子化,因此有利于化合物 I 的形成。