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通过共选择 MAGE 进行基因组规模的启动子工程

Genome-scale promoter engineering by coselection MAGE.

机构信息

Wyss Institute for Biologically Inspired Engineering, Harvard University, Boston, Massachusetts, USA.

出版信息

Nat Methods. 2012 Jun;9(6):591-3. doi: 10.1038/nmeth.1971. Epub 2012 Apr 8.

DOI:10.1038/nmeth.1971
PMID:22484848
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC3428217/
Abstract

Multiplex automated genome engineering (MAGE) uses short oligonucleotides to scarlessly modify genomes; however, insertions >10 bases are still inefficient but can be improved substantially by selection of highly modified chromosomes. Here we describe 'coselection' MAGE (CoS-MAGE) to optimize biosynthesis of aromatic amino acid derivatives by combinatorially inserting multiple T7 promoters simultaneously into 12 genomic operons. Promoter libraries can be quickly generated to study gain-of-function epistatic interactions in gene networks.

摘要

多重自动化基因组工程(MAGE)使用短寡核苷酸无痕修饰基因组;然而,插入长度 >10 个碱基仍然效率低下,但通过选择高度修饰的染色体可以大大改善。本文描述了“共选择”MAGE(CoS-MAGE),通过同时将多个 T7 启动子组合插入 12 个基因组操纵子中来优化芳香族氨基酸衍生物的生物合成。可以快速生成启动子文库,以研究基因网络中功能获得性上位性相互作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3959/3428217/2cac6152f6c8/nihms397904f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3959/3428217/df3bd95f74b0/nihms397904f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3959/3428217/2cac6152f6c8/nihms397904f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3959/3428217/df3bd95f74b0/nihms397904f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3959/3428217/2cac6152f6c8/nihms397904f2.jpg

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Precise manipulation of chromosomes in vivo enables genome-wide codon replacement.精确地在体内操纵染色体可实现全基因组密码子替换。
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Multiplexed genome engineering and genotyping methods applications for synthetic biology and metabolic engineering.
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