Research Unit in Environmental and Evolutionary Biology (URBE-NARILIS), University of Namur (FUNDP), B-5000 Namur, Belgium.
Anal Biochem. 2012 Jul 15;426(2):153-65. doi: 10.1016/j.ab.2012.04.009. Epub 2012 Apr 10.
Fish species possess many specific characteristics that support their use in ecotoxicology. Widely used in clinical research, peripheral blood mononuclear cells (PBMCs) can reasonably be exploited as relevant target cells in the assessment of environmental chemical toxicity. The current article focuses on the methods necessary to isolate, characterize, and culture fish PBMCs. These procedures were successfully applied on an endangered species, the European eel (Anguilla anguilla L.), and on an economically important and worldwide exported species, the Asian catfish (Pangasianodon hypophthalmus S.). Proteomic approaches can be useful to screen xenobiotic exposure at the protein expression level, giving the opportunity to develop early warning signals thanks to molecular signatures of toxicity. To date, a major limitation of proteomic analyses is that most protein expression profiles often reveal the same predominant and frequently differentially expressed families of proteins regardless of the experimental stressing conditions. The current study describes a methodology to get a postnuclear fraction of high quality isolated from fish PBMCs in order to perform subsequent subproteomic analyses. Applied on samples from eel, the subproteomic analysis (two-dimensional differential in-gel electrophoresis) allowed the identification by liquid chromatography-tandem mass spectrometry and searches in the full NCBInr (National Center for Biotechnology Information nonredundant) database of 66 proteins representing 36 different proteins validated through Peptide and Protein Prophet of Scaffold software.
鱼类具有许多支持其在生态毒理学中应用的特殊特征。外周血单核细胞(PBMCs)广泛应用于临床研究,可以合理地将其作为评估环境化学毒性的相关靶细胞加以利用。本文重点介绍分离、鉴定和培养鱼类 PBMCs 所需的方法。这些程序已成功应用于濒危物种欧洲鳗(Anguilla anguilla L.)和具有经济重要性和全球出口的物种亚洲鲶鱼(Pangasianodon hypophthalmus S.)。蛋白质组学方法可用于筛选外源生物暴露在蛋白质表达水平上,有机会通过毒性的分子特征开发早期预警信号。迄今为止,蛋白质组学分析的一个主要限制是,大多数蛋白质表达谱通常揭示相同的主要和经常差异表达的蛋白质家族,而不管实验应激条件如何。本研究描述了一种从鱼类 PBMCs 中分离高质量的核后部分的方法,以便进行随后的亚蛋白质组学分析。应用于鳗鱼样本的亚蛋白质组学分析(二维差异凝胶电泳)通过液相色谱-串联质谱和在完整的 NCBInr(国家生物技术信息中心非冗余)数据库中进行搜索,鉴定了 66 种蛋白质,代表通过 Scaffold 软件的肽和蛋白质 Prophet 验证的 36 种不同蛋白质。