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Structure-based design of supercharged, highly thermoresistant antibodies.基于结构的高效、高耐热性抗体设计。
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Alternative computational protocols for supercharging protein surfaces for reversible unfolding and retention of stability.用于为蛋白质表面增压以实现可逆解折叠和稳定性保持的替代计算方案。
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本文引用的文献

1
ROSETTA3: an object-oriented software suite for the simulation and design of macromolecules.ROSETTA3:一个用于大分子模拟与设计的面向对象软件套件。
Methods Enzymol. 2011;487:545-74. doi: 10.1016/B978-0-12-381270-4.00019-6.
2
Surface supercharged human enteropeptidase light chain shows improved solubility and refolding yield.表面超荷人性化肠促胰酶轻链展现出更好的溶解性和复性产率。
Protein Eng Des Sel. 2011 Mar;24(3):261-8. doi: 10.1093/protein/gzq104. Epub 2010 Nov 16.
3
RosettaAntibody: antibody variable region homology modeling server.罗塞塔抗体:抗体可变区同源建模服务器。
Nucleic Acids Res. 2009 Jul;37(Web Server issue):W474-9. doi: 10.1093/nar/gkp387. Epub 2009 May 20.
4
Mammalian cell penetration, siRNA transfection, and DNA transfection by supercharged proteins.带正电荷蛋白质介导的哺乳动物细胞穿透、小干扰RNA转染及DNA转染
Proc Natl Acad Sci U S A. 2009 Apr 14;106(15):6111-6. doi: 10.1073/pnas.0807883106. Epub 2009 Mar 23.
5
Toward high-resolution homology modeling of antibody Fv regions and application to antibody-antigen docking.迈向抗体Fv区域的高分辨率同源建模及其在抗体-抗原对接中的应用。
Proteins. 2009 Feb 1;74(2):497-514. doi: 10.1002/prot.22309.
6
Supercharging proteins can impart unusual resilience.增强蛋白质可以赋予其非凡的韧性。
J Am Chem Soc. 2007 Aug 22;129(33):10110-2. doi: 10.1021/ja071641y. Epub 2007 Aug 1.
7
Protein fabrication automation.蛋白质制造自动化。
Protein Sci. 2007 Mar;16(3):379-90. doi: 10.1110/ps.062591607. Epub 2007 Jan 22.
8
Evolution of highly active enzymes by homology-independent recombination.通过非同源重组进化出高活性酶。
Proc Natl Acad Sci U S A. 2005 Jul 19;102(29):10082-7. doi: 10.1073/pnas.0504556102. Epub 2005 Jul 11.
9
Electrostatically optimized Ras-binding Ral guanine dissociation stimulator mutants increase the rate of association by stabilizing the encounter complex.经静电优化的Ras结合型Ral鸟嘌呤解离刺激因子突变体通过稳定相遇复合物来提高结合速率。
Proc Natl Acad Sci U S A. 2004 Jun 22;101(25):9223-8. doi: 10.1073/pnas.0401160101. Epub 2004 Jun 14.
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Bead-based electrochemical immunoassay for bacteriophage MS2.基于磁珠的噬菌体MS2电化学免疫分析
Anal Chem. 2004 May 15;76(10):2700-7. doi: 10.1021/ac035503c.

基于结构的高效、高耐热性抗体设计。

Structure-based design of supercharged, highly thermoresistant antibodies.

作者信息

Miklos Aleksandr E, Kluwe Christien, Der Bryan S, Pai Supriya, Sircar Aroop, Hughes Randall A, Berrondo Monica, Xu Jianqing, Codrea Vlad, Buckley Patricia E, Calm Alena M, Welsh Heather S, Warner Candice R, Zacharko Melody A, Carney James P, Gray Jeffrey J, Georgiou George, Kuhlman Brian, Ellington Andrew D

机构信息

Center for Systems and Synthetic Biology, University of Texas at Austin, Austin, TX 78712, USA.

出版信息

Chem Biol. 2012 Apr 20;19(4):449-55. doi: 10.1016/j.chembiol.2012.01.018.

DOI:10.1016/j.chembiol.2012.01.018
PMID:22520751
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5583727/
Abstract

Mutation of surface residues to charged amino acids increases resistance to aggregation and can enable reversible unfolding. We have developed a protocol using the Rosetta computational design package that "supercharges" proteins while considering the energetic implications of each mutation. Using a homology model, a single-chain variable fragment antibody was designed that has a markedly enhanced resistance to thermal inactivation and displays an unanticipated ≈30-fold improvement in affinity. Such supercharged antibodies should prove useful for assays in resource-limited settings and for developing reagents with improved shelf lives.

摘要

将表面残基突变为带电荷的氨基酸可增加对聚集的抵抗力,并能实现可逆解折叠。我们开发了一种使用Rosetta计算设计软件包的方案,该方案在考虑每个突变的能量影响的同时对蛋白质进行“超荷化”。利用同源模型,设计了一种单链可变片段抗体,它对热失活具有显著增强的抵抗力,并且亲和力有意外的约30倍的提高。这种超荷化抗体在资源有限的环境中的检测以及开发保质期更长的试剂方面应该会很有用。